Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1975

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650254 to 651223 10342 mRNA_1975: 10343 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 651585 to 654888 10343 mRNA_1976: 10344 - Hypothetical Protein, at 655294 to 656131 10344

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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650,995 - 10342 mRNA_1974 0.76 -1.0
651,120 + 10342 mRNA_1974 0.89 -2.0
651,143 + -2.0
651,151 + -1.7
651,151 - -1.5
651,151 - -1.1
651,168 - -3.8
651,329 - 0.1
651,333 - -0.1
651,334 + 0.7
651,341 - -0.4
651,347 - -1.3
651,487 + 1.0
651,619 + 1.0
651,654 + -1.4
651,793 + -0.4
651,924 - 10343 mRNA_1975 0.10 -0.3
652,023 + 10343 mRNA_1975 0.13 -1.0
652,048 - 10343 mRNA_1975 0.14 -4.9
652,151 - 10343 mRNA_1975 0.17 -3.5
653,068 - 10343 mRNA_1975 0.45 -0.1
653,157 + 10343 mRNA_1975 0.48 -1.3
653,497 + 10343 mRNA_1975 0.58 0.3
653,657 + 10343 mRNA_1975 0.63 -1.0
653,661 - 10343 mRNA_1975 0.63 -1.5
654,309 + 10343 mRNA_1975 0.82 1.3
654,315 - 10343 mRNA_1975 0.83 -1.0
654,348 - 10343 mRNA_1975 0.84 -0.8
654,624 - -1.3
654,656 - -1.3
654,920 + -3.1
655,205 + -2.7
655,376 - -0.0
655,501 - 10344 mRNA_1976 0.25 -1.3