Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1974

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1973: 10341 - KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton, at 646183 to 650027 10341 mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650254 to 651223 10342 mRNA_1975: 10343 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 651585 to 654888 10343

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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649,354 - 10341 mRNA_1973 0.82 -1.7
649,362 + 10341 mRNA_1973 0.83 -1.7
649,386 - 10341 mRNA_1973 0.83 -1.4
649,555 - 10341 mRNA_1973 0.88 -1.2
649,776 - -2.3
650,090 - -2.8
650,093 - -0.8
650,122 - -0.9
650,167 + -1.9
650,171 - -0.6
650,194 + 0.9
650,227 + -2.6
650,312 - -1.2
650,402 + 10342 mRNA_1974 0.15 0.4
650,560 - 10342 mRNA_1974 0.32 -1.0
650,995 - 10342 mRNA_1974 0.76 -1.0
651,120 + 10342 mRNA_1974 0.89 -2.0
651,143 + -2.0
651,151 + -1.7
651,151 - -1.5
651,151 - -1.1
651,168 - -3.8
651,329 - 0.1
651,333 - -0.1
651,334 + 0.7
651,341 - -0.4
651,347 - -1.3
651,487 + 1.0
651,619 + 1.0
651,654 + -1.4
651,793 + -0.4
651,924 - 10343 mRNA_1975 0.10 -0.3
652,023 + 10343 mRNA_1975 0.13 -1.0
652,048 - 10343 mRNA_1975 0.14 -4.9
652,151 - 10343 mRNA_1975 0.17 -3.5