Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1973

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645186 to 645812 10340 mRNA_1973: 10341 - KOG1057 Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton, at 646183 to 650027 10341 mRNA_1974: 10342 - KOG4067 Uncharacterized conserved protein, at 650254 to 651223 10342

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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645,956 + -1.8
647,793 - 10341 mRNA_1973 0.42 0.2
648,124 - 10341 mRNA_1973 0.50 -3.1
649,354 - 10341 mRNA_1973 0.82 -1.7
649,362 + 10341 mRNA_1973 0.83 -1.7
649,386 - 10341 mRNA_1973 0.83 -1.4
649,555 - 10341 mRNA_1973 0.88 -1.2
649,776 - -2.3
650,090 - -2.8
650,093 - -0.8
650,122 - -0.9
650,167 + -1.9
650,171 - -0.6
650,194 + 0.9
650,227 + -2.6
650,312 - -1.2
650,402 + 10342 mRNA_1974 0.15 0.4
650,560 - 10342 mRNA_1974 0.32 -1.0
650,995 - 10342 mRNA_1974 0.76 -1.0