Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1965

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1964: 10332 - K01495 GCH1, folE GTP cyclohydrolase I, at 621166 to 622157 10332 mRNA_1965: 10333 - K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1, at 622721 to 626978 10333

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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622,426 + -0.3
622,432 + -0.6
622,583 + -0.5
622,593 + -0.1
622,682 + -2.2
622,714 - -0.1
623,037 + -2.1
623,613 + 10333 mRNA_1965 0.21 -0.2
624,315 - 10333 mRNA_1965 0.37 0.7
624,577 + 10333 mRNA_1965 0.44 -1.7
624,741 - 10333 mRNA_1965 0.47 -0.3
625,165 - 10333 mRNA_1965 0.57 -1.3
625,750 + 10333 mRNA_1965 0.71 -1.1
625,945 + 10333 mRNA_1965 0.76 -1.5
626,630 - 0.2
626,730 - -0.8
626,779 + -1.5
626,792 - -0.8
627,654 + 0.2
627,670 + -0.6
627,670 + -0.2
627,672 + -0.2
627,809 + -1.8
627,813 + 0.1
627,813 - 0.8
627,819 - -2.0
627,823 - -1.5