Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1956

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1956: 10324 - BLAST 40S ribosomal protein S1 [Exophiala sideris], at 606971 to 607614 10324 mRNA_1957: 10325 - K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae, at 607981 to 609583 10325

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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606,122 + -1.3
606,243 - -3.0
606,372 + -0.6
606,388 - -1.9
606,407 + -1.0
606,410 + 0.5
606,541 + -3.0
606,542 + 0.3
606,542 - -0.2
606,551 - 1.0
606,594 + 0.5
606,680 - -1.4
606,704 - 0.4
606,710 + -1.2
606,996 - -0.2
607,303 + 10324 mRNA_1956 0.52 -0.9
607,305 + 10324 mRNA_1956 0.52 -1.7
607,373 - 10324 mRNA_1956 0.62 -1.5
607,470 - 10324 mRNA_1956 0.77 -1.4
607,473 + 10324 mRNA_1956 0.78 -2.1
607,616 - -0.1
607,686 + -1.7
607,773 - -0.2
607,789 - -3.8
607,790 - 0.1
607,884 - -1.5
607,903 - -2.9
607,905 - 0.2
607,907 - -2.7