Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1946

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1945: 10313 - Hypothetical Protein, at 574351 to 575148 10313 mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314 mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577345 to 578684 10315

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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574,139 - -2.2
574,157 - 0.4
574,163 - -1.5
574,169 - -0.3
574,169 - -1.3
574,172 + -0.7
574,173 + -2.8
574,175 + -2.7
574,178 - -1.6
574,183 + -0.9
574,191 + -3.0
574,193 + -1.9
574,193 + 0.2
574,289 - -3.0
574,384 + -0.7
574,450 - 10313 mRNA_1945 0.12 -2.1
574,459 + 10313 mRNA_1945 0.14 -4.1
574,470 - 10313 mRNA_1945 0.15 -2.6
574,475 + 10313 mRNA_1945 0.16 -3.9
574,510 + 10313 mRNA_1945 0.20 -2.9
574,572 + 10313 mRNA_1945 0.28 -2.8
574,764 - 10313 mRNA_1945 0.52 -2.9
574,803 + 10313 mRNA_1945 0.57 -2.4
575,060 - 10313 mRNA_1945 0.89 0.8
575,323 - 10314 mRNA_1946 0.10 -3.7
575,481 + 10314 mRNA_1946 0.18 -0.6
575,652 - 10314 mRNA_1946 0.27 -3.3
575,652 + 10314 mRNA_1946 0.27 -2.2
576,687 + 10314 mRNA_1946 0.80 -3.7
576,826 - 10314 mRNA_1946 0.87 -2.8
576,969 + 0.5
576,995 + -1.6
577,010 + -2.5
577,038 - -2.4
577,122 - -3.6
577,176 + -0.6
577,437 + -2.5
577,444 + -3.3
577,548 - 10315 mRNA_1947 0.15 -1.8
577,836 - 10315 mRNA_1947 0.37 -2.1
577,838 + 10315 mRNA_1947 0.37 -1.7
577,851 - 10315 mRNA_1947 0.38 0.6
577,987 - 10315 mRNA_1947 0.48 -4.8