Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1941

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561164 to 563777 10308 mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309 mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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563,280 - 10308 mRNA_1940 0.81 -0.8
563,293 + 10308 mRNA_1940 0.81 -0.6
563,561 - 0.0
563,640 + -0.7
563,755 + -2.3
563,848 - -1.7
563,870 + -0.2
563,886 + -1.5
563,888 - 0.1
563,897 + -1.6
563,905 + -2.7
563,905 - -0.6
563,909 - 1.3
563,909 + -1.1
563,915 - -1.1
564,040 - -1.6
564,043 + -0.1
564,048 - -2.5
564,070 + -1.5
564,205 + -1.3
564,206 - -1.4
564,372 + -2.6
564,375 + -0.8
564,786 - 10309 mRNA_1941 0.21 -3.6
565,363 + 10309 mRNA_1941 0.41 -0.0
565,363 + 10309 mRNA_1941 0.41 -1.6
566,247 + 10309 mRNA_1941 0.73 -1.9
566,514 - 10309 mRNA_1941 0.82 -1.1
566,641 - 10309 mRNA_1941 0.87 -3.1
566,650 + 10309 mRNA_1941 0.87 -0.7
566,663 - 10309 mRNA_1941 0.88 1.8
566,689 - 10309 mRNA_1941 0.89 -1.9
566,882 - 0.7
566,995 + -1.3
567,101 - -0.7
567,109 - -0.7
567,112 + 0.5
567,232 - -0.2
567,253 + -0.5
567,376 - -4.1
567,399 - -0.7
567,510 + -0.0
567,536 + -0.5
567,546 + -0.4
567,547 + -0.1
567,552 - -1.0
567,699 - -1.9
567,702 + -3.3
568,004 - 10310 mRNA_1942 0.16 -1.8