Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1940

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558580 to 560603 10307 mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561164 to 563777 10308 mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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560,181 + 10307 mRNA_1939 0.79 -1.2
560,236 - 10307 mRNA_1939 0.82 -0.1
560,531 - -1.4
560,666 - -0.3
560,684 + -2.3
560,688 - -0.1
560,696 + -0.8
560,716 + -2.9
560,720 + -0.1
560,726 + -2.8
560,727 - -0.6
560,747 - -1.5
560,756 - -2.2
560,781 + -1.0
560,798 - -0.3
560,817 + 0.1
560,826 + -0.9
560,827 - -2.5
560,836 - -0.2
560,840 + 0.3
560,850 + -1.3
560,852 - -2.0
560,864 + -1.1
560,864 - 0.3
560,986 - 1.3
560,990 - -0.1
560,991 + -1.6
560,996 - -1.1
560,997 - -0.4
561,002 + -0.5
561,002 - -0.7
561,009 + -0.6
561,011 + -0.9
561,011 + -1.0
561,014 - -0.4
561,024 - -0.1
561,026 + -1.2
561,030 + -1.3
561,031 + -1.3
561,034 + -1.1
561,059 + -0.2
561,059 - 0.6
561,065 + -0.5
561,067 - -0.9
561,068 + 1.6
561,075 - -2.3
561,076 + -2.7
561,077 + -1.9
561,081 - 0.3
561,083 + -2.4
561,089 - -2.6
561,091 + -0.1
561,093 + 1.6
561,093 + -2.0
561,095 - -2.6
561,098 + -1.1
561,104 + 0.1
561,104 + -1.7
561,106 + -3.0
561,208 + -1.0
561,227 - -0.9
561,232 + -2.2
561,243 - -3.0
561,244 + 0.2
561,339 + -0.2
561,519 - 10308 mRNA_1940 0.14 -2.5
561,592 - 10308 mRNA_1940 0.16 1.3
561,681 - 10308 mRNA_1940 0.20 -0.3
561,684 + 10308 mRNA_1940 0.20 -3.4
562,384 + 10308 mRNA_1940 0.47 -0.8
562,417 - 10308 mRNA_1940 0.48 -0.2
562,543 - 10308 mRNA_1940 0.53 -1.1
562,568 + 10308 mRNA_1940 0.54 -1.0
562,657 + 10308 mRNA_1940 0.57 -1.5
562,687 - 10308 mRNA_1940 0.58 0.3
562,856 + 10308 mRNA_1940 0.65 -0.7
563,001 - 10308 mRNA_1940 0.70 -2.6
563,014 - 10308 mRNA_1940 0.71 -0.4
563,280 - 10308 mRNA_1940 0.81 -0.8
563,293 + 10308 mRNA_1940 0.81 -0.6
563,561 - 0.0
563,640 + -0.7
563,755 + -2.3
563,848 - -1.7
563,870 + -0.2
563,886 + -1.5
563,888 - 0.1
563,897 + -1.6
563,905 + -2.7
563,905 - -0.6
563,909 - 1.3
563,909 + -1.1
563,915 - -1.1
564,040 - -1.6
564,043 + -0.1
564,048 - -2.5
564,070 + -1.5
564,205 + -1.3
564,206 - -1.4
564,372 + -2.6
564,375 + -0.8