Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1936

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1935: 10303 - K00654 SPT serine palmitoyltransferase, at 548678 to 550878 10303 mRNA_1936: 10304 - K07424 CYP3A cytochrome P450, family 3, subfamily A, at 551220 to 553834 10304 mRNA_1937: 10305 - K18342 OTUD6 OTU domain-containing protein 6, at 554394 to 556031 10305

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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550,946 - -2.0
551,289 + -1.1
551,529 - 10304 mRNA_1936 0.12 -1.2
551,549 - 10304 mRNA_1936 0.13 -1.0
551,571 + 10304 mRNA_1936 0.13 -1.0
551,985 + 10304 mRNA_1936 0.29 -1.6
552,989 - 10304 mRNA_1936 0.68 1.7
553,157 - 10304 mRNA_1936 0.74 -1.8
553,466 + 10304 mRNA_1936 0.86 1.8
553,727 - -2.6
553,734 - -0.3
553,865 + -2.0
553,868 + -2.1
553,890 - -4.5
553,893 + -2.0
553,903 + -0.8
553,909 - -2.3
553,916 + -1.3
553,945 - -2.0
553,981 - -1.9
554,011 + -1.9
554,025 + 0.2
554,029 - -1.7
554,038 - 0.7
554,040 + -0.8
554,040 + 0.9
554,046 + -2.9
554,064 + -0.4
554,069 + -1.7
554,074 + -1.7
554,084 + -1.8
554,096 + -0.6
554,105 + -0.4
554,147 - -2.3
554,147 - 1.7
554,149 - 0.1
554,165 - -0.0
554,165 - -1.6
554,165 + -2.1
554,174 - -1.5
554,185 + -1.8
554,326 - -2.2
554,334 - -1.4
554,336 + -1.3
554,349 + -0.6
554,350 + -0.5
554,361 + -1.0
554,367 + -2.4
554,470 + -1.9
554,816 - 10305 mRNA_1937 0.26 -1.0