Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1924

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1923: 10291 - K19787 CARNMT1 carnosine N-methyltransferase, at 519459 to 521071 10291 mRNA_1924: 10292 - K00763 pncB, NAPRT1 nicotinate phosphoribosyltransferase, at 521294 to 523495 10292 mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523662 to 525143 10293

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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520,403 + 10291 mRNA_1923 0.59 -0.8
520,562 + 10291 mRNA_1923 0.68 -2.5
520,961 - -0.5
520,987 + -0.2
521,109 - -0.2
521,119 + -2.9
521,123 - -0.7
521,274 + -3.3
521,278 + 0.2
521,286 + -3.8
521,318 + -0.7
521,432 + 0.7
521,435 - -3.9
521,482 + -0.5
521,567 - 10292 mRNA_1924 0.12 -0.2
521,726 - 10292 mRNA_1924 0.20 -2.1
521,727 - 10292 mRNA_1924 0.20 -0.3
521,757 + 10292 mRNA_1924 0.21 -0.5
521,995 + 10292 mRNA_1924 0.32 -1.2
522,569 + 10292 mRNA_1924 0.58 -2.7
522,744 + 10292 mRNA_1924 0.66 -1.4
523,142 - 10292 mRNA_1924 0.84 -1.2
523,148 + 10292 mRNA_1924 0.84 -1.5
523,304 + -0.2
523,423 + -1.4
523,585 - -0.7
523,935 + 10293 mRNA_1925 0.18 -2.9
524,175 + 10293 mRNA_1925 0.35 -0.7
524,320 - 10293 mRNA_1925 0.44 -1.0