Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1916

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1915: 10283 - K03063 PSMC4, RPT3 26S proteasome regulatory subunit T3, at 506230 to 507925 10283 mRNA_1916: 10284 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Domain of unknown function (DUF3425)-PF11905,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 508004 to 509890 10284 mRNA_1917: 10285 - K04488 iscU, nifU nitrogen fixation protein NifU and related proteins, at 510192 to 511246 10285

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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507,920 + -1.5
507,927 + -2.4
508,043 - -1.5
508,043 + -0.5
508,504 + 10284 mRNA_1916 0.26 -3.2
509,354 + 10284 mRNA_1916 0.72 -0.9
509,488 - 10284 mRNA_1916 0.79 -0.3
509,628 - 10284 mRNA_1916 0.86 -2.5
509,771 - -0.8
509,890 - -0.8
509,930 - -0.8
510,245 + -0.1