Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1912

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497993 to 499871 10279 mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500203 to 502614 10280 mRNA_1913: 10281 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 503193 to 504426 10281

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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499,291 + 10279 mRNA_1911 0.69 -2.5
499,407 - 10279 mRNA_1911 0.75 -1.9
499,546 - 10279 mRNA_1911 0.83 -0.5
499,684 - -1.4
499,692 - -3.2
499,857 + -0.4
499,859 + 0.9
500,024 + -3.8
500,154 - -1.1
500,305 - -1.3
500,439 + -0.1
501,107 + 10280 mRNA_1912 0.37 -0.7
501,345 + 10280 mRNA_1912 0.47 -2.4
501,633 + 10280 mRNA_1912 0.59 -1.0
501,653 + 10280 mRNA_1912 0.60 -1.3
502,205 - 10280 mRNA_1912 0.83 -3.2
502,233 + 10280 mRNA_1912 0.84 -3.4
502,361 - 10280 mRNA_1912 0.89 -0.6
502,364 + 10280 mRNA_1912 0.90 -2.6
502,518 - -0.8
502,530 + -3.7
502,545 + -1.5
502,551 + -0.6
502,627 + -2.0
502,652 + -1.9
502,661 + -0.3
502,664 - -3.1
502,669 - -1.9
502,673 - -1.1
502,678 + -1.4
502,679 + -0.6
502,690 + -0.6
502,705 + -2.5
502,716 + -1.2
502,724 + -1.5
502,826 - -2.2
502,826 + -2.0
502,827 + -0.2
502,834 + 0.5
502,838 + -3.6
502,855 + -1.1
502,859 - 0.6
502,864 + 0.1
502,876 + -1.7
502,968 - -0.4
502,988 - -0.1
502,989 + -2.0
502,989 + -0.4
502,995 - -1.4
503,000 - -3.2
503,002 - -1.6
503,003 - -2.2
503,023 + 0.9
503,024 - -2.9
503,064 + 0.4
503,148 + -4.7
503,149 + -0.9
503,153 - -1.8
503,157 - 0.0
503,157 - -2.5
503,158 + -1.0