Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1911

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1910: 10278 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 495564 to 497825 10278 mRNA_1911: 10279 - K14967 BRE2, CPS60 COMPASS component BRE2, at 497993 to 499871 10279 mRNA_1912: 10280 - K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2, at 500203 to 502614 10280

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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497,026 - 10278 mRNA_1910 0.65 -1.9
497,045 - 10278 mRNA_1910 0.65 -0.4
497,612 + -0.8
497,615 + -1.6
497,903 - -1.7
497,906 + -2.7
497,915 - 0.1
497,916 + -2.3
497,932 + -0.0
497,934 + -0.8
498,067 + -1.5
498,072 - -4.2
498,512 + 10279 mRNA_1911 0.28 -1.4
499,112 + 10279 mRNA_1911 0.60 0.9
499,125 + 10279 mRNA_1911 0.60 -1.9
499,291 + 10279 mRNA_1911 0.69 -2.5
499,407 - 10279 mRNA_1911 0.75 -1.9
499,546 - 10279 mRNA_1911 0.83 -0.5
499,684 - -1.4
499,692 - -3.2
499,857 + -0.4
499,859 + 0.9
500,024 + -3.8
500,154 - -1.1
500,305 - -1.3
500,439 + -0.1