Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1901

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464695 to 468117 10268 mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468442 to 470059 10269 mRNA_1902: 10270 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 470180 to 472538 10270

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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467,464 + 10268 mRNA_1900 0.81 -0.3
467,570 + 10268 mRNA_1900 0.84 0.5
467,590 + 10268 mRNA_1900 0.85 -1.8
467,733 - 10268 mRNA_1900 0.89 -0.7
468,105 - 0.3
468,209 + -2.0
468,247 - -2.2
468,373 - -2.1
468,375 + -1.0
468,382 + -1.7
468,383 - -0.7
469,707 + 10269 mRNA_1901 0.78 -3.1
469,797 - 10269 mRNA_1901 0.84 -1.3
469,970 - -1.7
469,975 + -0.8
470,044 - -1.8
470,133 - -0.6
470,202 - -0.3
470,382 - -0.2
470,383 - -2.1
470,438 + 10270 mRNA_1902 0.11 -1.1
470,454 - 10270 mRNA_1902 0.12 -1.3