Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1885

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1884: 10252 - Hypothetical Protein, at 432578 to 433282 10252 mRNA_1885: 10253 - KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family), at 433544 to 436141 10253 mRNA_1886: 10254 - KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins, at 436589 to 438730 10254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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432,594 + -1.2
432,744 - 10252 mRNA_1884 0.24 -2.9
432,781 - 10252 mRNA_1884 0.29 0.5
432,934 + 10252 mRNA_1884 0.50 -2.2
433,043 - 10252 mRNA_1884 0.66 0.8
433,088 + 10252 mRNA_1884 0.72 -2.8
433,196 - 10252 mRNA_1884 0.88 -1.3
433,197 - 10252 mRNA_1884 0.88 0.9
433,214 + -1.7
433,265 + -1.6
433,799 + -1.2
434,085 - 10253 mRNA_1885 0.21 -2.3
434,117 + 10253 mRNA_1885 0.22 -2.5
434,134 - 10253 mRNA_1885 0.23 -3.3
434,708 - 10253 mRNA_1885 0.45 -3.7
434,726 - 10253 mRNA_1885 0.45 0.3
434,732 + 10253 mRNA_1885 0.46 -2.4
435,124 - 10253 mRNA_1885 0.61 2.0
435,297 - 10253 mRNA_1885 0.67 0.6
435,310 + 10253 mRNA_1885 0.68 -2.1
435,432 - 10253 mRNA_1885 0.73 -2.3
435,864 - 10253 mRNA_1885 0.89 -0.4
436,025 - -1.6
436,135 - -2.8
436,142 + -1.4
436,146 + -3.4
436,148 - -4.0
436,172 - -1.0
436,300 + -3.9
436,306 - -1.2
436,323 + -0.6
436,330 - -0.8
436,343 + -1.8
436,347 + -1.8
436,367 - 1.3
436,476 - -2.4
436,508 + -1.0
436,598 - -1.2
436,632 - -1.8
436,969 + 10254 mRNA_1886 0.18 1.2