Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1883

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1882: 10250 - HMMPfam-S4 domain-PF01479,ProSitePatterns-Ribosomal protein S4 signature.-PS00632,ProSiteProfiles-S4 RNA-binding domain profile.-PS50889,SMART-S4 RNA-binding domain-SM00363,SUPERFAMILY--SSF55174, at 428761 to 429844 10250 mRNA_1883: 10251 - KOG2665 Predicted FAD-dependent oxidoreductase, at 430168 to 431962 10251 mRNA_1884: 10252 - Hypothetical Protein, at 432578 to 433282 10252

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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430,062 + -0.4
430,062 - -0.2
430,063 - 0.4
430,068 - -1.8
430,069 + -3.5
430,072 + -2.7
430,138 - -1.9
430,206 - -0.7
430,213 - -1.8
430,218 + -3.3
430,635 - 10251 mRNA_1883 0.26 -0.2
430,649 + 10251 mRNA_1883 0.27 -2.3
430,830 - 10251 mRNA_1883 0.37 -0.5
430,848 - 10251 mRNA_1883 0.38 -0.5
430,935 - 10251 mRNA_1883 0.43 -0.3
430,982 + 10251 mRNA_1883 0.45 -2.0
431,077 + 10251 mRNA_1883 0.51 -1.8
431,514 - 10251 mRNA_1883 0.75 -0.8
431,546 + 10251 mRNA_1883 0.77 -0.4
431,699 - 10251 mRNA_1883 0.85 1.1
431,738 + 10251 mRNA_1883 0.87 1.0
431,792 - -1.4
431,806 - -2.2
431,826 - -2.0
431,829 - -0.3
431,845 - 0.9
431,866 + -1.8
431,866 + -0.2
431,982 + -3.3
431,982 + -0.8
431,990 - -2.9
431,997 - 0.7
431,998 + 0.9
432,006 - -2.2
432,011 + -3.0
432,023 + 0.2
432,036 + -2.0
432,054 + -2.1
432,066 - -1.0
432,067 + -2.6
432,085 - -0.4
432,116 + -0.5
432,123 - 0.4
432,124 + 0.7
432,134 - 0.4
432,134 - 0.1
432,134 - -1.7
432,137 - -1.7
432,143 + -2.7
432,147 - 0.5
432,147 - -1.6
432,157 + -1.9
432,160 + -1.4
432,162 - -1.8
432,165 + -1.2
432,165 - -1.9
432,165 + -1.2
432,185 - 0.3
432,188 - -0.6
432,190 + -1.8
432,197 + -0.1
432,203 - 0.2
432,230 + 0.0
432,234 - -1.4
432,317 + -0.7
432,335 + -0.0
432,370 - -2.6
432,378 - -0.7
432,379 - -2.7
432,387 - -1.2
432,390 + -2.4
432,391 - -0.9
432,391 - -1.2
432,398 - -1.6
432,407 + -0.8
432,425 - -2.0
432,436 + -0.8
432,442 + 0.0
432,444 - -0.9
432,450 - -1.9
432,451 - -2.9
432,451 + -3.2
432,458 + -0.9
432,461 + 0.4
432,483 - -1.9
432,483 + -2.4
432,489 - -3.4
432,499 + -0.1
432,500 - -1.1
432,501 + 0.2
432,507 + -1.7
432,594 + -1.2
432,744 - 10252 mRNA_1884 0.24 -2.9
432,781 - 10252 mRNA_1884 0.29 0.5
432,934 + 10252 mRNA_1884 0.50 -2.2