Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1869

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1867: 10235 - HMMPfam-von Willebrand factor type A domain-PF00092,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 402517 to 403659 10235 mRNA_1868: 10236 - K11569 DAD4, HSK2 DASH complex subunit DAD4, at 403783 to 404255 10236 mRNA_1869: 10237 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 404642 to 406231 10237 mRNA_1870: 10238 - K18043 OCA1 tyrosine-protein phosphatase OCA1, at 406751 to 407606 10238

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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404,320 - -2.6
405,041 - 10237 mRNA_1869 0.25 -0.2
405,205 - 10237 mRNA_1869 0.35 -1.6
405,646 + 10237 mRNA_1869 0.63 -3.0
406,521 - -1.7
406,541 + -0.0
406,657 - -2.9
406,689 - -1.7
406,704 - -0.4
406,706 + 0.3
406,972 + 10238 mRNA_1870 0.26 -2.9