Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1866

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1865: 10233 - K02729 PSMA5 20S proteasome subunit alpha 5, at 399738 to 401124 10233 mRNA_1866: 10234 - KOG4455 Uncharacterized conserved protein, at 401287 to 402071 10234 mRNA_1867: 10235 - HMMPfam-von Willebrand factor type A domain-PF00092,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 402517 to 403659 10235

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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401,202 + -0.7
401,232 - -1.1
401,241 - -0.0
401,241 - -2.2
401,381 - 10234 mRNA_1866 0.12 -2.5
401,393 - 10234 mRNA_1866 0.14 -0.5
401,515 + 10234 mRNA_1866 0.29 -1.9
401,660 - 10234 mRNA_1866 0.48 -1.8
401,706 + 10234 mRNA_1866 0.53 -2.3
401,972 + 10234 mRNA_1866 0.87 -1.9
401,993 + 0.8
402,104 - -2.3
402,126 + -0.8
402,181 - 0.1
402,184 + -2.9
402,246 - -1.5
402,271 + 0.7
402,279 + -0.1
402,306 - -0.6
402,332 + 0.6
402,335 - -0.9
402,444 + -1.9
402,573 + -0.5
402,868 + 10235 mRNA_1867 0.31 -2.8