Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1857

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1856: 10224 - K10863 APTX aprataxin, at 382335 to 383661 10224 mRNA_1857: 10225 - KOG2533 Permease of the major facilitator superfamily, at 383950 to 386547 10225 mRNA_1858: 10226 - K19245 JLP1 sulfonate dioxygenase, at 387260 to 388608 10226

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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383,428 - 10224 mRNA_1856 0.82 -0.2
383,454 - 10224 mRNA_1856 0.84 -1.0
383,459 - 10224 mRNA_1856 0.85 -0.3
383,753 - -0.2
383,946 - -0.5
384,191 + -2.3
384,504 - 10225 mRNA_1857 0.21 0.8
384,513 + 10225 mRNA_1857 0.22 -1.9
385,193 - 10225 mRNA_1857 0.48 -0.5
385,344 - 10225 mRNA_1857 0.54 0.0
385,504 + 10225 mRNA_1857 0.60 0.6
385,608 + 10225 mRNA_1857 0.64 -0.7
385,912 - 10225 mRNA_1857 0.76 -0.3
386,076 - 10225 mRNA_1857 0.82 -0.0
386,196 - 10225 mRNA_1857 0.86 -2.4
386,197 + 10225 mRNA_1857 0.86 -3.1
386,340 - 0.3
386,493 - -4.5
386,504 - -3.3
386,512 + 0.3
386,633 + -2.6
386,658 - -1.0
386,798 + -1.6
386,815 - -2.2
386,821 + -0.6
386,823 + -3.4
386,932 - 0.5
386,952 - -1.9
386,962 - -4.1
386,963 + -1.2
386,966 - -2.7
386,966 - -3.9
386,972 - 0.6
386,974 + -1.4
386,976 - -0.1
387,098 - -2.3
387,128 + -1.4
387,147 + -0.2
387,241 + -1.1
387,286 - 0.0
387,394 - -3.1
387,397 + 10226 mRNA_1858 0.10 0.2
387,532 - 10226 mRNA_1858 0.20 -0.7