Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1854

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1853: 10221 - KOG4147 Uncharacterized conserved protein, at 377840 to 378489 10221 mRNA_1854: 10222 - Hypothetical Protein, at 378651 to 380549 10222 mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380959 to 382150 10223

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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378,636 - -2.0
378,652 - 0.4
378,663 - -1.7
378,798 + -1.1
378,958 + 10222 mRNA_1854 0.16 -1.8
379,013 - 10222 mRNA_1854 0.19 -1.5
379,251 + 10222 mRNA_1854 0.32 -3.7
379,260 + 10222 mRNA_1854 0.32 -1.2
379,395 - 10222 mRNA_1854 0.39 -1.1
379,543 - 10222 mRNA_1854 0.47 -1.4
379,547 + 10222 mRNA_1854 0.47 -1.3
379,549 + 10222 mRNA_1854 0.47 -2.0
379,643 + 10222 mRNA_1854 0.52 -0.7
379,643 + 10222 mRNA_1854 0.52 -0.9
379,643 + 10222 mRNA_1854 0.52 -0.1
379,644 + 10222 mRNA_1854 0.52 -1.1
379,650 + 10222 mRNA_1854 0.53 -2.2
380,053 - 10222 mRNA_1854 0.74 -1.5
380,373 - -1.0
380,387 + -2.5
380,398 - -1.5
380,402 - -1.1
380,415 - -0.8
380,575 - -1.4
380,576 + -0.3
380,685 - -2.5
380,703 + -1.4
380,720 - -1.5
380,720 - -1.1
380,723 + -0.3
380,731 + -1.3
380,826 + -2.7
380,841 + -4.3
380,882 + -0.6
380,986 - -2.3
380,992 - -2.3
380,994 + -2.8
381,140 - 10223 mRNA_1855 0.15 -2.3
381,144 + 10223 mRNA_1855 0.16 -1.3
381,145 - 10223 mRNA_1855 0.16 -2.0
381,165 + 10223 mRNA_1855 0.17 -3.3
381,408 + 10223 mRNA_1855 0.38 -0.1
381,436 - 10223 mRNA_1855 0.40 -2.0