Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1847

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1846: 10214 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 357162 to 359735 10214 mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215 mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362950 to 364987 10216

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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359,459 + 10214 mRNA_1846 0.89 -2.6
359,471 - 10214 mRNA_1846 0.90 0.6
359,473 + 10214 mRNA_1846 0.90 -1.2
359,492 + -2.0
359,503 + -1.6
359,595 - -0.6
359,598 + -0.5
359,606 + -1.6
359,609 - 0.2
359,624 + 0.1
359,731 - -0.7
359,759 - -2.1
359,776 + -2.3
359,781 - -2.1
359,786 + 0.5
359,788 + -1.9
359,902 + -0.2
359,902 - -0.3
359,909 + -1.4
359,912 + -1.4
359,915 + -1.4
359,954 + -1.2
359,961 - -0.1
360,001 + -1.9
360,003 - -3.4
360,003 + -1.4
360,022 - -1.9
360,032 + -0.7
360,047 + -2.3
360,051 + -1.0
360,057 - -1.7
360,060 + -0.5
360,070 - -2.2
360,071 + -1.9
360,073 + -2.3
360,077 + -0.7
360,087 + -2.3
360,093 - -0.8
360,093 + -0.9
360,105 + -0.8
360,105 + -0.0
360,115 - -1.0
360,132 + -2.0
360,135 - -0.3
360,140 - 0.0
360,147 + -3.5
360,148 - -3.5
360,148 - -4.4
360,148 - -0.3
360,149 + -1.5
360,150 - -0.4
360,151 + -2.9
360,151 + -3.4
360,156 + -1.8
360,156 + -0.5
360,157 + -0.7
360,160 - -3.8
360,160 + -0.6
360,161 - -0.7
360,161 + -0.7
360,161 - -1.5
360,165 + -1.8
360,168 + -1.5
360,171 + -1.6
360,175 + -0.3
360,175 + -0.9
360,177 + -1.8
360,177 + -0.0
360,181 - -2.0
360,181 - -1.3
360,186 - -1.6
360,187 + -0.4
360,192 - -2.9
360,199 - 0.8
360,201 + -2.9
360,203 - -3.0
360,203 + 1.1
360,203 - -0.7
360,204 - -0.4
360,204 + -1.3
360,204 + 0.5
360,205 - -0.3
360,213 - -3.3
360,224 - -0.2
360,232 - -0.1
360,233 + -0.2
360,237 + -2.1
360,241 + 0.4
360,241 + -3.4
360,242 + -0.8
360,242 - -1.3
360,243 - -1.5
360,244 - -0.3
360,244 - -1.7
360,246 + -0.1
360,246 + -0.1
360,246 + -0.7
360,249 + -3.0
360,249 - 0.6
360,251 + -0.7
360,251 + 0.3
360,252 + -2.3
360,254 - -1.0
360,256 + -3.1
360,260 + 1.0
360,260 - -1.6
360,263 + -1.2
360,264 - -3.6
360,265 + -1.1
360,267 - 0.8
360,268 + -1.2
360,268 + -0.5
360,268 + 0.1
360,268 + -3.1
360,269 + -2.0
360,269 - -1.6
360,272 - 0.8
360,274 - 0.2
360,276 - -0.5
360,277 - -0.9
360,280 - -1.5
360,285 - 0.2
360,290 + -0.4
360,304 + 0.8
360,417 - -3.0
360,431 - -1.4
360,442 + -2.0
360,558 + 10215 mRNA_1847 0.12 -0.4
360,691 - 10215 mRNA_1847 0.19 -3.0
360,875 - 10215 mRNA_1847 0.28 -2.4
360,892 - 10215 mRNA_1847 0.29 -3.5
361,162 - 10215 mRNA_1847 0.43 -1.0
361,289 + 10215 mRNA_1847 0.49 -2.3
361,905 - 10215 mRNA_1847 0.80 0.3
361,912 + 10215 mRNA_1847 0.80 -2.5
361,933 + 10215 mRNA_1847 0.81 0.2
362,009 - 10215 mRNA_1847 0.85 -0.9
362,329 + 0.9
362,352 - -2.1
362,382 - -4.2
362,404 - -0.3
362,488 - -0.7
362,489 - -1.9
362,509 - -0.9
362,516 + 0.9
362,518 - -2.0
362,519 - -0.9
362,527 + -1.2
362,538 - -0.5
362,541 + -0.5
362,545 + -1.6
362,545 + -0.4
362,555 + -1.4
362,557 + -3.0
362,559 + -1.6
362,560 - -1.5
362,564 - -0.7
362,567 - -0.5
362,571 - 0.2
362,571 + -1.4
362,584 - 0.6
362,589 + -0.6
362,605 - -2.4
362,628 - -1.6
362,639 - -1.6
362,640 + -2.6
362,641 + 0.8
362,643 + -4.2
362,644 + -1.2
362,647 - -0.9
362,676 - -1.6
362,676 + -0.0
362,689 - -1.8
362,692 + -0.3
362,693 + -0.9
362,698 - 0.5
362,698 - -1.5
362,702 - -0.5
362,708 + 0.5
362,717 - 1.3
362,717 + -0.4
362,721 - -3.2
362,726 - -0.6
362,731 - -2.1
362,732 + -1.3
362,735 - -0.4
362,750 + -0.6
362,751 + -1.8
362,752 + 2.3
362,753 + -2.1
362,753 + -2.2
362,758 - -1.2
362,764 - 0.9
362,766 - -1.3
362,775 + -3.1
362,775 - -0.8
362,776 + -1.4
362,778 + -1.7
362,789 + -0.4
362,797 - -0.7
362,801 + -3.9
362,803 + -3.7
362,812 + -2.5
362,813 + 0.1
362,911 + -1.2
362,912 - -0.7
362,945 - -2.4
362,949 - -1.5
363,058 + -1.1
363,086 - -1.1
363,093 + -1.5
363,097 - -0.9
363,230 - 10216 mRNA_1848 0.14 -0.6
363,257 + 10216 mRNA_1848 0.15 0.1