Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1846

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1845: 10213 - K06127 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 355986 to 356917 10213 mRNA_1846: 10214 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 357162 to 359735 10214 mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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356,934 - -1.1
357,121 - -2.8
357,148 - -2.6
357,384 - 0.3
357,728 + 10214 mRNA_1846 0.22 -0.1
357,999 + 10214 mRNA_1846 0.33 -0.5
358,010 + 10214 mRNA_1846 0.33 -2.5
358,138 - 10214 mRNA_1846 0.38 -2.1
358,448 + 10214 mRNA_1846 0.50 -0.9
358,457 - 10214 mRNA_1846 0.50 -1.4
358,713 - 10214 mRNA_1846 0.60 -0.8
358,721 - 10214 mRNA_1846 0.61 0.8
358,731 + 10214 mRNA_1846 0.61 -2.3
358,735 + 10214 mRNA_1846 0.61 -0.7
358,882 - 10214 mRNA_1846 0.67 -2.8
359,021 - 10214 mRNA_1846 0.72 -0.4
359,022 + 10214 mRNA_1846 0.72 -1.6
359,168 + 10214 mRNA_1846 0.78 0.2
359,459 + 10214 mRNA_1846 0.89 -2.6
359,471 - 10214 mRNA_1846 0.90 0.6
359,473 + 10214 mRNA_1846 0.90 -1.2
359,492 + -2.0
359,503 + -1.6
359,595 - -0.6
359,598 + -0.5
359,606 + -1.6
359,609 - 0.2
359,624 + 0.1
359,731 - -0.7
359,759 - -2.1
359,776 + -2.3
359,781 - -2.1
359,786 + 0.5
359,788 + -1.9
359,902 + -0.2
359,902 - -0.3
359,909 + -1.4
359,912 + -1.4
359,915 + -1.4
359,954 + -1.2
359,961 - -0.1
360,001 + -1.9
360,003 - -3.4
360,003 + -1.4
360,022 - -1.9
360,032 + -0.7
360,047 + -2.3
360,051 + -1.0
360,057 - -1.7
360,060 + -0.5
360,070 - -2.2
360,071 + -1.9
360,073 + -2.3
360,077 + -0.7
360,087 + -2.3
360,093 - -0.8
360,093 + -0.9
360,105 + -0.8
360,105 + -0.0
360,115 - -1.0
360,132 + -2.0
360,135 - -0.3
360,140 - 0.0
360,147 + -3.5
360,148 - -3.5
360,148 - -4.4
360,148 - -0.3
360,149 + -1.5
360,150 - -0.4
360,151 + -2.9
360,151 + -3.4
360,156 + -1.8
360,156 + -0.5
360,157 + -0.7
360,160 - -3.8
360,160 + -0.6
360,161 - -0.7
360,161 + -0.7
360,161 - -1.5
360,165 + -1.8
360,168 + -1.5
360,171 + -1.6
360,175 + -0.3
360,175 + -0.9
360,177 + -1.8
360,177 + -0.0
360,181 - -2.0
360,181 - -1.3
360,186 - -1.6
360,187 + -0.4
360,192 - -2.9
360,199 - 0.8
360,201 + -2.9
360,203 - -3.0
360,203 + 1.1
360,203 - -0.7
360,204 - -0.4
360,204 + -1.3
360,204 + 0.5
360,205 - -0.3
360,213 - -3.3
360,224 - -0.2
360,232 - -0.1
360,233 + -0.2
360,237 + -2.1
360,241 + 0.4
360,241 + -3.4
360,242 + -0.8
360,242 - -1.3
360,243 - -1.5
360,244 - -0.3
360,244 - -1.7
360,246 + -0.1
360,246 + -0.1
360,246 + -0.7
360,249 + -3.0
360,249 - 0.6
360,251 + -0.7
360,251 + 0.3
360,252 + -2.3
360,254 - -1.0
360,256 + -3.1
360,260 + 1.0
360,260 - -1.6
360,263 + -1.2
360,264 - -3.6
360,265 + -1.1
360,267 - 0.8
360,268 + -1.2
360,268 + -0.5
360,268 + 0.1
360,268 + -3.1
360,269 + -2.0
360,269 - -1.6
360,272 - 0.8
360,274 - 0.2
360,276 - -0.5
360,277 - -0.9
360,280 - -1.5
360,285 - 0.2
360,290 + -0.4
360,304 + 0.8
360,417 - -3.0
360,431 - -1.4
360,442 + -2.0
360,558 + 10215 mRNA_1847 0.12 -0.4
360,691 - 10215 mRNA_1847 0.19 -3.0