Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1843

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344816 to 347199 10210 mRNA_1843: 10211 - Hypothetical Protein, at 347522 to 353659 10211 mRNA_1844: 10212 - K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 353890 to 355492 10212

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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346,774 + 10210 mRNA_1842 0.82 2.9
346,782 - 10210 mRNA_1842 0.82 -4.0
346,910 - 10210 mRNA_1842 0.88 1.2
346,921 + 10210 mRNA_1842 0.88 -0.6
346,924 - 10210 mRNA_1842 0.88 -1.0
347,075 + -0.4
347,187 - -0.9
347,214 + -1.2
347,335 + -0.4
347,346 - -2.8
347,361 - -2.8
347,363 - -0.2
347,365 + 1.0
347,371 - -0.1
347,401 - -2.3
347,515 + -2.1
347,525 + -1.5
347,529 - -1.5
347,676 - -1.5
347,794 - -0.4
347,806 + -0.4
347,832 + 0.2
347,836 + -5.2
347,949 - -2.2
347,955 + 0.9
348,222 + 10211 mRNA_1843 0.11 -1.2
348,268 - 10211 mRNA_1843 0.12 -2.3
348,360 - 10211 mRNA_1843 0.14 0.4
348,398 + 10211 mRNA_1843 0.14 -0.8
348,406 + 10211 mRNA_1843 0.14 0.0
348,686 + 10211 mRNA_1843 0.19 -1.0
348,701 + 10211 mRNA_1843 0.19 0.0
349,262 + 10211 mRNA_1843 0.28 -1.5
349,452 + 10211 mRNA_1843 0.31 -1.5
349,530 - 10211 mRNA_1843 0.33 -3.3
349,549 + 10211 mRNA_1843 0.33 -1.6
349,572 + 10211 mRNA_1843 0.33 -1.7
349,588 + 10211 mRNA_1843 0.34 0.2
349,712 - 10211 mRNA_1843 0.36 1.4
349,807 - 10211 mRNA_1843 0.37 -0.2
350,158 + 10211 mRNA_1843 0.43 0.1
351,293 - 10211 mRNA_1843 0.61 -1.1
352,105 + 10211 mRNA_1843 0.75 -0.5
352,402 - 10211 mRNA_1843 0.80 1.1
352,780 - 10211 mRNA_1843 0.86 -1.4
352,896 - 10211 mRNA_1843 0.88 1.5
352,923 - 10211 mRNA_1843 0.88 -2.0
352,928 + 10211 mRNA_1843 0.88 1.0
353,169 - 0.1
353,520 - -2.3
353,688 - -1.1
353,690 - -0.6
353,809 + 0.8
353,811 + -0.7
353,818 - -1.1
353,821 - -0.4
353,822 + -0.4
353,835 - -0.7
353,875 - -3.0
354,073 - 10212 mRNA_1844 0.11 -0.9