Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1824

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1823: 10191 - KOG3783 Uncharacterized conserved protein, at 298528 to 301287 10191 mRNA_1824: 10192 - Hypothetical Protein, at 301582 to 303988 10192 mRNA_1825: 10193 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 304648 to 308455 10193

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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300,864 + 10191 mRNA_1823 0.85 0.5
300,926 - 10191 mRNA_1823 0.87 -1.7
301,161 + -0.2
301,201 + -2.8
301,314 + -0.0
301,325 - -1.1
301,336 - 1.1
301,475 - -1.9
301,485 + -1.3
301,503 - -1.1
301,504 - -4.6
301,505 + 0.4
301,510 - -2.7
301,608 - -2.5
301,649 - -1.3
301,665 + -1.2
301,682 + -2.1
302,762 + 10192 mRNA_1824 0.49 0.3
302,824 + 10192 mRNA_1824 0.52 -1.7
302,958 + 10192 mRNA_1824 0.57 -2.9
302,985 - 10192 mRNA_1824 0.58 -0.0
303,092 - 10192 mRNA_1824 0.63 -2.9
303,169 - 10192 mRNA_1824 0.66 -0.6
303,384 + 10192 mRNA_1824 0.75 0.9
303,612 - 10192 mRNA_1824 0.84 -1.4
303,973 - -0.7
304,091 + -3.0
304,129 - -3.1
304,163 + -0.4
304,242 + -0.2
304,246 + -1.9
304,262 - -0.5
304,270 - -2.0
304,282 - -0.7
304,411 + -0.4
304,415 - 0.2
304,429 + -2.0
304,565 - -0.2
304,585 + 0.3
304,881 + -1.0