Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1821

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1820: 10188 - Hypothetical Protein, at 290979 to 291681 10188 mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291714 to 294112 10189 mRNA_1822: 10190 - KOG0627 Heat shock transcription factor, at 294810 to 296545 10190

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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290,806 + 0.8
290,952 - -0.5
291,258 - 10188 mRNA_1820 0.40 0.5
291,269 - 10188 mRNA_1820 0.41 0.6
291,271 - 10188 mRNA_1820 0.42 0.9
291,275 - 10188 mRNA_1820 0.42 -1.9
291,276 - 10188 mRNA_1820 0.42 0.4
291,278 + 10188 mRNA_1820 0.43 -2.0
291,281 - 10188 mRNA_1820 0.43 -1.9
291,283 + 10188 mRNA_1820 0.43 -0.0
291,283 - 10188 mRNA_1820 0.43 -3.8
291,289 + 10188 mRNA_1820 0.44 -0.6
291,289 + 10188 mRNA_1820 0.44 -1.2
291,290 - 10188 mRNA_1820 0.44 -0.8
291,297 + 10188 mRNA_1820 0.45 -0.2
291,299 + 10188 mRNA_1820 0.46 1.2
291,300 - 10188 mRNA_1820 0.46 -0.3
291,317 - 10188 mRNA_1820 0.48 0.1
291,349 + 10188 mRNA_1820 0.53 -0.4
291,352 - 10188 mRNA_1820 0.53 -0.8
291,358 - 10188 mRNA_1820 0.54 -0.6
291,370 + 10188 mRNA_1820 0.56 -1.1
291,371 + 10188 mRNA_1820 0.56 -2.8
291,416 - 10188 mRNA_1820 0.62 -2.5
291,416 + 10188 mRNA_1820 0.62 -1.6
291,437 + 10188 mRNA_1820 0.65 -0.3
291,438 + 10188 mRNA_1820 0.65 -1.0
291,520 + 10188 mRNA_1820 0.77 -1.0
291,552 - 10188 mRNA_1820 0.82 -0.3
291,557 - 10188 mRNA_1820 0.82 -2.2
291,581 + 10188 mRNA_1820 0.86 -3.1
291,582 - 10188 mRNA_1820 0.86 -2.8
291,587 + 10188 mRNA_1820 0.86 -0.9
291,596 + 10188 mRNA_1820 0.88 -0.1
291,601 + 10188 mRNA_1820 0.88 0.9
291,620 - 0.0
291,762 - 0.0
291,781 - -0.8
291,799 - 0.1
291,933 - -3.9
291,962 - 10189 mRNA_1821 0.10 -1.0
292,036 - 10189 mRNA_1821 0.13 -0.9
292,042 - 10189 mRNA_1821 0.14 -2.6
292,049 + 10189 mRNA_1821 0.14 -1.1
292,064 - 10189 mRNA_1821 0.15 -1.6
292,222 - 10189 mRNA_1821 0.21 0.6
292,240 + 10189 mRNA_1821 0.22 -1.3
292,380 - 10189 mRNA_1821 0.28 -2.1
292,403 - 10189 mRNA_1821 0.29 -2.4
292,501 - 10189 mRNA_1821 0.33 0.3
293,253 - 10189 mRNA_1821 0.64 -2.1
293,542 + 10189 mRNA_1821 0.76 0.5
293,793 + 10189 mRNA_1821 0.87 -1.0
293,854 - 10189 mRNA_1821 0.89 -0.5
293,983 - -2.5
294,137 - -0.1
294,190 - -1.7
294,407 - -1.5
294,410 + -1.7
294,451 + -4.1
294,562 - -2.1
295,045 - 10190 mRNA_1822 0.14 -0.6