Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1820

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287876 to 290451 10187 mRNA_1820: 10188 - Hypothetical Protein, at 290979 to 291681 10188 mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291714 to 294112 10189

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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290,007 - 10187 mRNA_1819 0.83 1.2
290,340 + -1.5
290,518 - -0.9
290,661 - 0.4
290,665 - 0.4
290,806 + 0.8
290,952 - -0.5
291,258 - 10188 mRNA_1820 0.40 0.5
291,269 - 10188 mRNA_1820 0.41 0.6
291,271 - 10188 mRNA_1820 0.42 0.9
291,275 - 10188 mRNA_1820 0.42 -1.9
291,276 - 10188 mRNA_1820 0.42 0.4
291,278 + 10188 mRNA_1820 0.43 -2.0
291,281 - 10188 mRNA_1820 0.43 -1.9
291,283 + 10188 mRNA_1820 0.43 -0.0
291,283 - 10188 mRNA_1820 0.43 -3.8
291,289 + 10188 mRNA_1820 0.44 -0.6
291,289 + 10188 mRNA_1820 0.44 -1.2
291,290 - 10188 mRNA_1820 0.44 -0.8
291,297 + 10188 mRNA_1820 0.45 -0.2
291,299 + 10188 mRNA_1820 0.46 1.2
291,300 - 10188 mRNA_1820 0.46 -0.3
291,317 - 10188 mRNA_1820 0.48 0.1
291,349 + 10188 mRNA_1820 0.53 -0.4
291,352 - 10188 mRNA_1820 0.53 -0.8
291,358 - 10188 mRNA_1820 0.54 -0.6
291,370 + 10188 mRNA_1820 0.56 -1.1
291,371 + 10188 mRNA_1820 0.56 -2.8
291,416 - 10188 mRNA_1820 0.62 -2.5
291,416 + 10188 mRNA_1820 0.62 -1.6
291,437 + 10188 mRNA_1820 0.65 -0.3
291,438 + 10188 mRNA_1820 0.65 -1.0
291,520 + 10188 mRNA_1820 0.77 -1.0
291,552 - 10188 mRNA_1820 0.82 -0.3
291,557 - 10188 mRNA_1820 0.82 -2.2
291,581 + 10188 mRNA_1820 0.86 -3.1
291,582 - 10188 mRNA_1820 0.86 -2.8
291,587 + 10188 mRNA_1820 0.86 -0.9
291,596 + 10188 mRNA_1820 0.88 -0.1
291,601 + 10188 mRNA_1820 0.88 0.9
291,620 - 0.0
291,762 - 0.0
291,781 - -0.8
291,799 - 0.1
291,933 - -3.9
291,962 - 10189 mRNA_1821 0.10 -1.0
292,036 - 10189 mRNA_1821 0.13 -0.9
292,042 - 10189 mRNA_1821 0.14 -2.6
292,049 + 10189 mRNA_1821 0.14 -1.1
292,064 - 10189 mRNA_1821 0.15 -1.6
292,222 - 10189 mRNA_1821 0.21 0.6
292,240 + 10189 mRNA_1821 0.22 -1.3
292,380 - 10189 mRNA_1821 0.28 -2.1
292,403 - 10189 mRNA_1821 0.29 -2.4
292,501 - 10189 mRNA_1821 0.33 0.3