Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1819

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1818: 10186 - Hypothetical Protein, at 286917 to 287591 10186 mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287876 to 290451 10187 mRNA_1820: 10188 - Hypothetical Protein, at 290979 to 291681 10188

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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286,887 + -1.0
287,167 + 10186 mRNA_1818 0.37 -2.2
287,172 - 10186 mRNA_1818 0.38 1.3
287,175 + 10186 mRNA_1818 0.38 -0.9
287,196 - 10186 mRNA_1818 0.41 -0.9
287,199 + 10186 mRNA_1818 0.42 -1.0
287,311 - 10186 mRNA_1818 0.58 -1.1
287,331 - 10186 mRNA_1818 0.61 0.7
287,335 - 10186 mRNA_1818 0.62 -0.3
287,359 - 10186 mRNA_1818 0.65 -1.2
287,382 + 10186 mRNA_1818 0.69 -0.5
287,395 + 10186 mRNA_1818 0.71 -2.1
287,400 - 10186 mRNA_1818 0.72 -0.4
287,403 + 10186 mRNA_1818 0.72 0.2
287,406 + 10186 mRNA_1818 0.72 -1.1
287,489 + 10186 mRNA_1818 0.85 -0.9
287,533 + 1.2
287,645 + 0.1
287,654 - -1.2
287,656 + -0.0
287,660 - -3.9
287,712 - -1.6
287,721 + -1.8
287,778 - -1.5
287,778 + -2.2
287,778 + -1.3
287,795 + -2.3
287,803 + -1.2
287,853 - -0.6
287,967 + -0.6
287,995 - -0.9
288,007 - -2.3
288,010 + -0.5
288,014 + -0.3
288,017 - -0.2
288,018 + -3.1
288,019 + -3.1
288,037 + -1.5
288,151 + 10187 mRNA_1819 0.11 0.5
288,164 + 10187 mRNA_1819 0.11 -0.3
288,171 + 10187 mRNA_1819 0.11 0.3
288,472 + 10187 mRNA_1819 0.23 -1.4
288,479 + 10187 mRNA_1819 0.23 -0.2
288,497 + 10187 mRNA_1819 0.24 -1.6
288,897 + 10187 mRNA_1819 0.40 -2.0
288,900 - 10187 mRNA_1819 0.40 -1.4
289,187 + 10187 mRNA_1819 0.51 -1.6
289,606 + 10187 mRNA_1819 0.67 0.3
289,680 + 10187 mRNA_1819 0.70 -0.7
289,783 - 10187 mRNA_1819 0.74 -0.9
289,963 + 10187 mRNA_1819 0.81 -2.8
290,007 - 10187 mRNA_1819 0.83 1.2
290,340 + -1.5
290,518 - -0.9
290,661 - 0.4
290,665 - 0.4
290,806 + 0.8
290,952 - -0.5
291,258 - 10188 mRNA_1820 0.40 0.5
291,269 - 10188 mRNA_1820 0.41 0.6
291,271 - 10188 mRNA_1820 0.42 0.9
291,275 - 10188 mRNA_1820 0.42 -1.9
291,276 - 10188 mRNA_1820 0.42 0.4
291,278 + 10188 mRNA_1820 0.43 -2.0
291,281 - 10188 mRNA_1820 0.43 -1.9
291,283 + 10188 mRNA_1820 0.43 -0.0
291,283 - 10188 mRNA_1820 0.43 -3.8
291,289 + 10188 mRNA_1820 0.44 -0.6
291,289 + 10188 mRNA_1820 0.44 -1.2
291,290 - 10188 mRNA_1820 0.44 -0.8
291,297 + 10188 mRNA_1820 0.45 -0.2
291,299 + 10188 mRNA_1820 0.46 1.2
291,300 - 10188 mRNA_1820 0.46 -0.3
291,317 - 10188 mRNA_1820 0.48 0.1
291,349 + 10188 mRNA_1820 0.53 -0.4
291,352 - 10188 mRNA_1820 0.53 -0.8
291,358 - 10188 mRNA_1820 0.54 -0.6
291,370 + 10188 mRNA_1820 0.56 -1.1
291,371 + 10188 mRNA_1820 0.56 -2.8
291,416 - 10188 mRNA_1820 0.62 -2.5
291,416 + 10188 mRNA_1820 0.62 -1.6
291,437 + 10188 mRNA_1820 0.65 -0.3
291,438 + 10188 mRNA_1820 0.65 -1.0