Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1816

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1815: 10183 - K20777 EXD2 exonuclease 3'-5' domain-containing protein 2, at 280165 to 281761 10183 mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282501 to 284889 10184 mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285247 to 286558 10185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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281,657 - -2.7
281,659 - -1.1
281,661 - -2.7
281,682 + -1.3
281,748 + -0.5
281,762 - -1.3
281,784 - 0.1
281,785 + -3.0
281,803 - 0.7
281,808 - -2.7
281,810 + -3.3
281,826 - -2.5
281,827 + -0.6
281,859 - -2.1
281,896 + -0.7
281,935 + -2.2
281,950 + -0.4
281,978 - -1.8
281,981 + -0.9
282,003 - -2.1
282,004 + -1.8
282,008 - -1.7
282,015 + 2.8
282,019 - -2.2
282,025 + 0.0
282,040 + -2.2
282,076 + -2.3
282,184 + -2.2
282,195 - -0.8
282,209 + -1.4
282,212 + -3.4
282,215 - -0.7
282,240 + -1.1
282,242 - -1.7
282,280 + -0.2
282,282 + -2.9
282,287 + -3.0
282,306 - -0.3
282,310 + -0.3
282,352 - -2.7
282,352 + -1.7
282,355 - -0.2
282,360 + -0.8
282,361 + -2.1
282,361 - -1.8
282,362 - -1.7
282,364 - 0.3
282,364 + 1.1
282,364 - -0.5
282,375 - -0.9
282,381 + 1.2
282,382 + -2.3
282,387 - -1.8
282,395 + -0.8
282,397 + 0.1
282,401 - -0.7
282,418 - -0.4
282,439 - -0.1
282,522 + -1.6
282,532 + -2.3
282,569 + -2.0
282,579 + -2.1
282,678 - -0.8
282,887 - 10184 mRNA_1816 0.16 0.7
283,251 - 10184 mRNA_1816 0.31 -1.5
283,858 - 10184 mRNA_1816 0.57 -1.4
283,883 - 10184 mRNA_1816 0.58 -1.0
284,062 - 10184 mRNA_1816 0.65 -1.5
284,484 - 10184 mRNA_1816 0.83 -2.9
284,620 + 10184 mRNA_1816 0.89 -2.6
284,916 - -0.6
284,925 + -0.1
285,737 + 10185 mRNA_1817 0.37 -2.1