Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1811

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260255 to 261213 10178 mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261573 to 264889 10179 mRNA_1812: 10180 - Hypothetical Protein, at 265152 to 268202 10180

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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260,981 + 10178 mRNA_1810 0.76 0.3
260,996 - 10178 mRNA_1810 0.77 -2.5
260,999 + 10178 mRNA_1810 0.78 -0.8
261,007 + 10178 mRNA_1810 0.78 0.2
261,013 - 10178 mRNA_1810 0.79 -0.3
261,015 - 10178 mRNA_1810 0.79 -2.9
261,156 - -0.9
261,169 - -2.3
261,174 - -3.8
261,185 - -3.3
261,299 - -0.5
261,302 + -1.6
261,314 + 0.5
261,348 - 0.6
261,356 + -1.3
261,363 - -3.8
261,364 - -1.7
261,481 - -0.5
261,648 - 0.2
261,654 - 0.2
263,096 - 10179 mRNA_1811 0.46 -1.0
264,832 - 0.3
264,878 + -2.7
265,020 - -2.3
265,146 + -2.6
265,865 - 10180 mRNA_1812 0.23 -1.0
265,872 + 10180 mRNA_1812 0.24 -2.9