Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1799

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225398 to 226777 10166 mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226927 to 229515 10167 mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229665 to 231047 10168

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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225,955 + 10166 mRNA_1798 0.40 -0.7
226,375 + 10166 mRNA_1798 0.71 0.2
226,382 + 10166 mRNA_1798 0.71 -0.7
226,465 + 10166 mRNA_1798 0.77 -2.2
227,104 - -0.5
227,305 + 10167 mRNA_1799 0.15 -1.4
227,717 + 10167 mRNA_1799 0.31 -2.7
228,134 + 10167 mRNA_1799 0.47 -1.3
228,137 - 10167 mRNA_1799 0.47 -0.7
228,276 - 10167 mRNA_1799 0.52 -1.0
228,419 - 10167 mRNA_1799 0.58 -1.6
228,707 + 10167 mRNA_1799 0.69 1.1
228,859 - 10167 mRNA_1799 0.75 -0.1
228,970 - 10167 mRNA_1799 0.79 1.1
229,001 + 10167 mRNA_1799 0.80 -0.9
229,128 - 10167 mRNA_1799 0.85 -0.9
229,129 + 10167 mRNA_1799 0.85 -1.4
229,129 - 10167 mRNA_1799 0.85 -3.5
229,148 + 10167 mRNA_1799 0.86 -0.4
229,265 - -1.0
229,415 + -0.7
229,417 + -0.9
229,420 + -2.4
229,438 + -0.5
229,443 + 1.1
229,467 - -2.6
229,467 - -1.5
229,470 + -1.2
229,473 - -0.9
229,475 - -0.5
229,476 - -1.0
229,476 - 0.3
229,481 - 0.0
229,481 + -1.1
229,482 - 0.1
229,487 + 0.9
229,488 + -0.5
229,492 + -2.2
229,492 + -1.5
229,505 + -0.8
229,511 + -1.9
229,613 - -2.4
229,618 + -2.2
229,626 + -3.7
229,627 - -0.4
229,628 + 0.3
229,628 - -1.7
229,635 + -1.4
229,662 + 0.4
229,667 - 0.2
229,786 - -1.5
229,786 + -1.9
229,910 - 10168 mRNA_1800 0.18 -1.8
230,079 - 10168 mRNA_1800 0.30 -2.7
230,084 + 10168 mRNA_1800 0.30 -0.1
230,215 + 10168 mRNA_1800 0.40 -3.0
230,335 + 10168 mRNA_1800 0.48 0.8
230,398 - 10168 mRNA_1800 0.53 -0.3
230,489 + 10168 mRNA_1800 0.60 -1.5
230,489 + 10168 mRNA_1800 0.60 0.1