Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1788

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1787: 10155 - HMMPfam-Tctex-1 family-PF03645, at 207900 to 208690 10155 mRNA_1788: 10156 - K16368 DGK1 diacylglycerol kinase (CTP), at 208859 to 210446 10156 mRNA_1789: 10157 - K10573 UBE2A, UBC2, RAD6A ubiquitin-conjugating enzyme E2 A, at 210969 to 211922 10157

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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208,042 - 10155 mRNA_1787 0.18 -2.3
208,176 - 10155 mRNA_1787 0.35 0.7
208,349 - 10155 mRNA_1787 0.57 -1.3
208,476 - 10155 mRNA_1787 0.73 0.5
208,780 + -1.5
208,781 - -0.8
208,788 - -1.5
208,794 - 0.2
208,799 - -1.9
208,808 + -0.7
208,929 - 0.4
208,956 - -0.1
209,078 + 10156 mRNA_1788 0.14 0.8
209,128 - 10156 mRNA_1788 0.17 3.5
209,232 - 10156 mRNA_1788 0.23 -1.8
209,245 + 10156 mRNA_1788 0.24 -1.5
209,313 + 10156 mRNA_1788 0.29 -3.0
209,527 + 10156 mRNA_1788 0.42 0.2
209,563 - 10156 mRNA_1788 0.44 -0.2
209,970 + 10156 mRNA_1788 0.70 1.6
209,981 - 10156 mRNA_1788 0.71 -2.9
209,986 - 10156 mRNA_1788 0.71 0.3
210,123 - 10156 mRNA_1788 0.80 1.3
210,398 - 0.2
210,545 - -1.7
210,546 + -0.2
210,717 + -1.4
210,965 + -2.3