Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1779

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183899 to 184487 10146 mRNA_1779: 10147 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 185059 to 187419 10147 mRNA_1780: 10148 - K03097 CSNK2A casein kinase II subunit alpha, at 188095 to 190025 10148

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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184,417 - 10146 mRNA_1778 0.88 -4.5
184,427 - 10146 mRNA_1778 0.90 -1.3
184,433 + -3.2
184,565 + -1.1
184,845 - -1.7
184,853 + -1.8
184,856 - 1.3
184,881 + -0.6
184,882 - -3.0
184,883 + 0.6
184,891 + -2.8
184,894 - -2.5
184,898 - -3.5
184,899 - -0.5
184,933 - -0.6
184,954 + -1.7
185,068 - -0.8
185,079 - -0.1
185,245 + -0.0
185,257 + -1.8
185,259 - -3.6
185,402 + 10147 mRNA_1779 0.15 -1.8
185,452 - 10147 mRNA_1779 0.17 -1.3
185,466 + 10147 mRNA_1779 0.17 -1.1
185,492 - 10147 mRNA_1779 0.18 2.1
185,496 - 10147 mRNA_1779 0.19 -4.4
185,563 - 10147 mRNA_1779 0.21 0.2
185,795 - 10147 mRNA_1779 0.31 -2.1
185,964 - 10147 mRNA_1779 0.38 -1.4
186,055 - 10147 mRNA_1779 0.42 -2.9
186,229 - 10147 mRNA_1779 0.50 -1.8
186,345 + 10147 mRNA_1779 0.54 -3.3
186,625 - 10147 mRNA_1779 0.66 -3.8
186,726 + 10147 mRNA_1779 0.71 -0.9
186,749 + 10147 mRNA_1779 0.72 0.1
186,783 + 10147 mRNA_1779 0.73 -0.8
186,795 + 10147 mRNA_1779 0.74 -1.3
187,213 + -0.3
187,404 + -2.4
187,485 + -0.7
187,515 - 1.4
187,627 - -3.8
187,631 - 0.9
187,653 + -0.4
187,671 + -3.5
187,677 - -0.8
187,681 - -0.1
187,684 - 0.4
187,731 - -1.3
187,733 - -2.6
187,736 - -4.8
187,739 + 0.3
187,748 - 0.6
187,750 + -0.8
187,750 - -0.2
187,758 - -1.5
187,762 - -2.2
187,763 + -0.7
187,789 - -0.0
187,798 + -2.6
187,814 + -1.6
187,820 + -0.4
187,956 + 0.3
187,970 + -1.7