Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1775

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1774: 10142 - Hypothetical Protein, at 173181 to 173906 10142 mRNA_1775: 10143 - KOG1289 Amino acid transporters, at 174192 to 176320 10143 mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177304 to 181065 10144

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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173,224 + -1.1
173,309 - 10142 mRNA_1774 0.18 0.2
173,366 + 10142 mRNA_1774 0.25 -3.4
173,398 + 10142 mRNA_1774 0.30 1.0
173,504 + 10142 mRNA_1774 0.44 -2.4
173,512 + 10142 mRNA_1774 0.46 -2.4
173,596 + 10142 mRNA_1774 0.57 -0.0
173,634 + 10142 mRNA_1774 0.62 -1.6
173,650 + 10142 mRNA_1774 0.65 -3.3
173,899 - 1.1
173,986 + 0.2
174,073 - -1.0
174,104 - -1.5
174,126 + -1.1
174,238 + -2.1
174,377 + -3.9
174,562 - 10143 mRNA_1775 0.17 -0.7
174,565 + 10143 mRNA_1775 0.18 1.8
175,104 - 10143 mRNA_1775 0.43 -2.4
175,249 - 10143 mRNA_1775 0.50 -1.0
175,290 - 10143 mRNA_1775 0.52 -2.6
175,297 + 10143 mRNA_1775 0.52 0.1
175,464 - 10143 mRNA_1775 0.60 -2.6
175,541 - 10143 mRNA_1775 0.63 -2.0
175,853 - 10143 mRNA_1775 0.78 -1.0
175,873 + 10143 mRNA_1775 0.79 -1.7
175,963 - 10143 mRNA_1775 0.83 -2.1
175,969 + 10143 mRNA_1775 0.83 -0.8
176,010 - 10143 mRNA_1775 0.85 -1.8
176,089 - 10143 mRNA_1775 0.89 -0.1
176,151 + -2.2
176,265 + -0.6
176,295 - 1.1
176,309 - -0.3
176,401 - 0.5
176,432 + -1.2
176,432 - -2.6
176,441 - -2.6
176,442 + -1.3
176,459 + -2.3
176,471 - -1.1
176,473 - -1.1
176,499 + -2.8
176,515 + -2.1
176,516 + -0.1
176,517 - -0.3
176,527 + -1.3
176,572 + -0.0
176,575 - -4.1
176,680 + 1.3
176,723 - -2.6
176,749 - -1.1
176,889 + 0.4
177,019 - 0.0
177,025 - -1.0
177,038 + -2.4
177,050 + -1.7
177,064 - -1.3
177,200 - -0.0
177,201 + -0.5