Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1773

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1772: 10140 - K01480 speB agmatinase, at 169490 to 170600 10140 mRNA_1773: 10141 - Hypothetical Protein, at 171350 to 172928 10141 mRNA_1774: 10142 - Hypothetical Protein, at 173181 to 173906 10142

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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170,357 - 10140 mRNA_1772 0.78 -3.0
170,361 - 10140 mRNA_1772 0.78 -0.9
170,521 - -0.0
170,664 - -0.2
170,686 + -2.3
170,820 + -0.1
170,824 + 0.3
170,827 - -1.5
170,837 - -4.0
170,847 - -3.3
170,971 - -2.2
171,115 + -0.9
171,231 - 0.0
171,239 + -0.7
171,240 - -1.8
171,280 + -2.2
171,414 - -3.8
171,608 - 10141 mRNA_1773 0.16 -2.6
171,609 + 10141 mRNA_1773 0.16 -0.7
171,612 - 10141 mRNA_1773 0.17 0.3
171,853 + 10141 mRNA_1773 0.32 0.2
171,884 + 10141 mRNA_1773 0.34 -0.7
172,015 + 10141 mRNA_1773 0.42 -2.4
172,155 + 10141 mRNA_1773 0.51 -1.3
172,161 + 10141 mRNA_1773 0.51 -0.3
172,295 + 10141 mRNA_1773 0.60 -1.5
172,304 - 10141 mRNA_1773 0.60 -0.5
172,430 + 10141 mRNA_1773 0.68 0.1
172,798 + -3.2
172,878 - -0.0
172,916 - -2.0
172,933 + 0.9
173,158 - -2.9
173,224 + -1.1
173,309 - 10142 mRNA_1774 0.18 0.2
173,366 + 10142 mRNA_1774 0.25 -3.4
173,398 + 10142 mRNA_1774 0.30 1.0
173,504 + 10142 mRNA_1774 0.44 -2.4
173,512 + 10142 mRNA_1774 0.46 -2.4
173,596 + 10142 mRNA_1774 0.57 -0.0
173,634 + 10142 mRNA_1774 0.62 -1.6
173,650 + 10142 mRNA_1774 0.65 -3.3
173,899 - 1.1