Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1762

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1761: 10129 - K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E, at 141827 to 142144 10129 mRNA_1762: 10130 - Hypothetical Protein, at 142717 to 145078 10130 mRNA_1763: 10131 - Hypothetical Protein, at 145443 to 147690 10131

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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141,936 + 10129 mRNA_1761 0.34 -2.3
141,959 + 10129 mRNA_1761 0.42 -1.2
141,993 + 10129 mRNA_1761 0.52 -0.9
142,241 + 0.1
142,509 - -1.0
142,567 - -0.7
142,586 - -1.7
142,594 - 0.1
142,622 + -1.1
142,630 - -1.7
142,641 - -1.2
142,649 - -3.8
142,661 + -0.1
142,673 + -1.8
142,693 - -4.2
142,772 - -2.8
142,918 + -2.1
142,966 - 10130 mRNA_1762 0.11 -4.1
142,980 + 10130 mRNA_1762 0.11 -1.7
143,475 - 10130 mRNA_1762 0.32 -0.6
143,528 - 10130 mRNA_1762 0.34 -0.0
144,029 + 10130 mRNA_1762 0.56 -1.5
144,383 + 10130 mRNA_1762 0.71 -0.3
144,970 + -0.7
144,970 - -2.1
144,986 + -1.7
145,064 + -1.7
145,137 - -1.3
145,218 + 1.5
145,276 - -2.6
145,286 + -0.2
145,310 - 0.9
145,455 - -3.4
145,955 + 10131 mRNA_1763 0.23 -3.1
145,976 + 10131 mRNA_1763 0.24 -0.7