Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1747

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1746: 10114 - KOG2897 DNA-binding protein YL1 and related proteins, at 104226 to 106402 10114 mRNA_1747: 10115 - Hypothetical Protein, at 106989 to 107598 10115 mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108076 to 110507 10116

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
106,560 - -1.3
106,581 + -4.1
106,719 - -1.4
106,730 - 1.0
106,742 + -3.4
106,886 + -1.3
107,024 + -0.4
107,368 - 10115 mRNA_1747 0.62 -3.8
107,437 - 10115 mRNA_1747 0.73 -3.2
107,453 + 10115 mRNA_1747 0.76 -2.5
107,563 - -1.5
107,584 + -2.1
107,730 - -0.6
107,757 - -0.5
107,781 - -2.5
107,819 + -0.4
108,057 - -1.5
108,058 + -0.0
108,398 + 10116 mRNA_1748 0.13 -0.6