Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1739

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1738: 10106 - Hypothetical Protein, at 82841 to 84052 10106 mRNA_1739: 10107 - Hypothetical Protein, at 84456 to 87207 10107 mRNA_1740: 10108 - K20828 ZNF143_76, STAF zinc finger protein 143/76, at 87517 to 89814 10108

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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83,474 + 10106 mRNA_1738 0.52 -2.2
83,488 + 10106 mRNA_1738 0.53 -2.5
83,569 - 10106 mRNA_1738 0.60 -0.1
83,653 - 10106 mRNA_1738 0.67 -1.1
83,719 - 10106 mRNA_1738 0.72 -2.5
83,768 - 10106 mRNA_1738 0.76 -1.4
83,805 - 10106 mRNA_1738 0.80 -1.9
83,861 + 10106 mRNA_1738 0.84 -1.1
83,918 + 10106 mRNA_1738 0.89 -3.4
84,468 + -1.4
84,496 + -1.7
84,500 - -3.2
84,619 - 0.4
84,840 + 10107 mRNA_1739 0.14 -1.4
84,848 + 10107 mRNA_1739 0.14 -1.5
84,908 + 10107 mRNA_1739 0.16 0.2
84,917 - 10107 mRNA_1739 0.17 -2.5
84,933 - 10107 mRNA_1739 0.17 -1.2
84,951 + 10107 mRNA_1739 0.18 0.7
85,130 + 10107 mRNA_1739 0.24 -2.0
85,230 + 10107 mRNA_1739 0.28 -1.7
85,435 + 10107 mRNA_1739 0.36 0.9
85,543 - 10107 mRNA_1739 0.39 -2.1
85,721 - 10107 mRNA_1739 0.46 2.3
85,724 - 10107 mRNA_1739 0.46 -1.7
85,970 - 10107 mRNA_1739 0.55 -1.8
85,975 - 10107 mRNA_1739 0.55 -0.7
86,223 + 10107 mRNA_1739 0.64 -2.2
87,152 - -0.2
87,316 + -0.7
87,317 - -2.0
87,511 - 0.3
87,749 + 10108 mRNA_1740 0.10 -2.6
87,874 + 10108 mRNA_1740 0.16 -0.3
87,918 + 10108 mRNA_1740 0.17 -4.3
87,935 + 10108 mRNA_1740 0.18 -2.1
88,035 + 10108 mRNA_1740 0.23 -1.6
88,201 - 10108 mRNA_1740 0.30 -2.0