Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1729

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1728: 10096 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 55696 to 58007 10096 mRNA_1729: 10097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 58480 to 59986 10097 mRNA_1730: 10098 - KOG4708 Mitochondrial ribosomal protein MRP17, at 60318 to 61237 10098

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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57,702 - 10096 mRNA_1728 0.87 -4.0
57,979 - -0.1
58,434 + 0.4
58,702 + 10097 mRNA_1729 0.15 -0.2
59,158 + 10097 mRNA_1729 0.45 -0.7
59,167 - 10097 mRNA_1729 0.46 -1.1
59,173 + 10097 mRNA_1729 0.46 0.3
59,207 - 10097 mRNA_1729 0.48 -1.4
59,274 - 10097 mRNA_1729 0.53 -0.0
59,288 - 10097 mRNA_1729 0.54 -1.4
59,291 + 10097 mRNA_1729 0.54 -2.5
59,298 + 10097 mRNA_1729 0.54 -3.2
59,324 - 10097 mRNA_1729 0.56 -1.2
59,324 - 10097 mRNA_1729 0.56 -4.8
59,369 + 10097 mRNA_1729 0.59 -1.0
59,375 + 10097 mRNA_1729 0.59 -1.5
59,389 - 10097 mRNA_1729 0.60 -1.7
59,391 + 10097 mRNA_1729 0.60 0.9
59,407 - 10097 mRNA_1729 0.62 -2.0
59,535 - 10097 mRNA_1729 0.70 -2.4
59,536 + 10097 mRNA_1729 0.70 -1.8
59,566 + 10097 mRNA_1729 0.72 -0.9
59,570 + 10097 mRNA_1729 0.72 -0.3
59,720 - 10097 mRNA_1729 0.82 0.4
59,740 + 10097 mRNA_1729 0.84 -0.9
59,740 + 10097 mRNA_1729 0.84 -2.8
59,741 + 10097 mRNA_1729 0.84 1.5
59,749 - 10097 mRNA_1729 0.84 0.6
59,755 + 10097 mRNA_1729 0.85 1.4
59,791 + 10097 mRNA_1729 0.87 -2.7
59,877 + -2.4
59,896 - -0.6
59,908 - -0.5
60,020 - -0.5
60,036 - -2.9
60,036 - -1.6
60,040 + -0.9
60,047 - -0.8
60,048 + -3.5
60,061 - -1.1
60,062 + -1.6
60,065 - -2.7
60,068 + -2.1
60,069 + -2.7
60,070 + -3.8
60,083 + -0.6
60,086 - 0.8
60,089 + 0.4
60,089 - -1.3
60,090 + -2.2
60,143 + 1.4
60,163 - -2.4
60,173 + -1.8
60,271 - -1.0