Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1720

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1719: 10087 - Hypothetical Protein, at 27838 to 28571 10087 mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088 mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32428 to 34334 10089

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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28,359 - 10087 mRNA_1719 0.71 -3.2
28,380 - 10087 mRNA_1719 0.74 -2.8
28,426 - 10087 mRNA_1719 0.80 -1.6
28,545 - -3.5
28,694 - -1.4
28,716 - -1.4
28,757 + -2.0
29,016 - -0.3
29,145 - -3.2
29,145 - 0.1
29,449 + -1.5
29,598 + 10088 mRNA_1720 0.14 -0.7
29,598 + 10088 mRNA_1720 0.14 -1.5
29,687 + 10088 mRNA_1720 0.17 -1.5
29,721 - 10088 mRNA_1720 0.18 -2.6
29,917 + 10088 mRNA_1720 0.25 -2.6
29,934 + 10088 mRNA_1720 0.25 -1.3
30,137 + 10088 mRNA_1720 0.32 -0.5
30,166 + 10088 mRNA_1720 0.34 -2.5
30,290 - 10088 mRNA_1720 0.38 -1.2
30,335 - 10088 mRNA_1720 0.39 -1.3
30,561 + 10088 mRNA_1720 0.47 -3.1
30,612 + 10088 mRNA_1720 0.49 -0.3
30,790 + 10088 mRNA_1720 0.55 -2.6
30,878 + 10088 mRNA_1720 0.58 -0.8
30,999 - 10088 mRNA_1720 0.63 -0.8
31,332 + 10088 mRNA_1720 0.74 -0.6
31,359 - 10088 mRNA_1720 0.75 -1.6
31,450 - 10088 mRNA_1720 0.79 0.4
31,473 + 10088 mRNA_1720 0.79 -1.7
31,607 + 10088 mRNA_1720 0.84 -0.6
31,620 - 10088 mRNA_1720 0.85 -1.4
31,762 + 10088 mRNA_1720 0.90 -2.6
31,878 - -0.9
32,031 - -1.4
32,173 + -0.9
32,190 - -2.0
32,333 + -0.6
32,336 - -2.3
32,337 - -1.0
32,350 + 1.1
32,350 - -1.5
32,354 + -1.9
32,355 - -2.8
32,356 + 1.5
32,357 + -0.3
32,362 + -2.3
32,547 - -0.4
32,588 + -0.6
32,822 - 10089 mRNA_1721 0.21 -1.3
32,823 - 10089 mRNA_1721 0.21 -2.3
32,873 - 10089 mRNA_1721 0.23 -0.5