Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1719

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1718: 10086 - HMMPfam-Cytochrome C oxidase copper chaperone (COX17)-PF05051,SUPERFAMILY--SSF47072, at 26598 to 27052 10086 mRNA_1719: 10087 - Hypothetical Protein, at 27838 to 28571 10087 mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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27,099 + -1.6
27,101 - -1.4
27,102 + -0.5
27,105 - -2.8
27,136 + -3.7
27,226 - -0.2
27,527 - -3.8
27,536 + -0.3
27,660 - -1.2
27,683 - -2.1
27,694 - -2.1
27,711 - -0.4
27,777 + 1.4
27,983 - 10087 mRNA_1719 0.20 -2.0
28,111 - 10087 mRNA_1719 0.37 0.5
28,156 + 10087 mRNA_1719 0.43 -1.5
28,359 - 10087 mRNA_1719 0.71 -3.2
28,380 - 10087 mRNA_1719 0.74 -2.8
28,426 - 10087 mRNA_1719 0.80 -1.6
28,545 - -3.5
28,694 - -1.4
28,716 - -1.4
28,757 + -2.0
29,016 - -0.3
29,145 - -3.2
29,145 - 0.1
29,449 + -1.5