Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1714

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13985 to 15656 10081 mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15983 to 18222 10082 mRNA_1715: 10083 - K18328 DBR1 lariat debranching enzyme, at 18768 to 21096 10083

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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15,035 - 10081 mRNA_1713 0.63 -3.6
15,147 + 10081 mRNA_1713 0.69 -1.6
15,168 - 10081 mRNA_1713 0.71 0.2
15,195 - 10081 mRNA_1713 0.72 -2.1
15,332 - 10081 mRNA_1713 0.81 -2.1
15,394 + 10081 mRNA_1713 0.84 0.5
15,422 - 10081 mRNA_1713 0.86 -1.7
15,438 + 10081 mRNA_1713 0.87 -1.3
15,528 + 0.8
15,531 - -2.8
15,579 + -2.4
15,588 - -0.6
15,708 - -0.9
15,756 - -0.1
15,831 - -1.6
15,850 - -3.7
15,852 - -3.6
15,853 - -0.9
15,856 - 0.5
15,858 + -4.1
15,860 - -2.7
15,861 + -0.5
15,879 + -1.9
15,887 - -1.3
15,889 - -1.5
15,897 + 1.9
15,897 + -0.9
16,049 + -2.0
16,192 - -1.6
16,253 - 10082 mRNA_1714 0.12 -2.3
16,353 + 10082 mRNA_1714 0.17 -1.3
16,433 - 10082 mRNA_1714 0.20 -1.4
16,475 - 10082 mRNA_1714 0.22 0.2
16,614 + 10082 mRNA_1714 0.28 -0.4
16,658 - 10082 mRNA_1714 0.30 -0.1
16,767 - 10082 mRNA_1714 0.35 -1.3
16,771 - 10082 mRNA_1714 0.35 -2.1
16,771 - 10082 mRNA_1714 0.35 -0.8
16,802 + 10082 mRNA_1714 0.37 -1.2
16,845 - 10082 mRNA_1714 0.38 -3.6
16,849 + 10082 mRNA_1714 0.39 -4.1
16,853 - 10082 mRNA_1714 0.39 -3.1
16,868 + 10082 mRNA_1714 0.40 -2.3
16,918 - 10082 mRNA_1714 0.42 -1.3
16,945 + 10082 mRNA_1714 0.43 -0.8
16,989 - 10082 mRNA_1714 0.45 -1.5
17,060 + 10082 mRNA_1714 0.48 -2.0
17,189 - 10082 mRNA_1714 0.54 -0.9
17,379 + 10082 mRNA_1714 0.62 -1.6
17,442 - 10082 mRNA_1714 0.65 -1.0
17,473 - 10082 mRNA_1714 0.67 -0.4
17,609 - 10082 mRNA_1714 0.73 -0.8
17,631 - 10082 mRNA_1714 0.74 -3.8
17,661 + 10082 mRNA_1714 0.75 -1.3
17,781 - 10082 mRNA_1714 0.80 0.2
18,016 + -1.9
18,044 - 0.6
18,074 + -1.0
18,224 + -1.7
18,235 + -2.7
18,309 + -2.0
18,473 + -3.2
18,600 + 1.1
18,608 + -0.9
18,621 + -3.1
18,775 + -1.0
18,959 - -0.9