Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1713

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1712: 10080 - KOG2131 Uncharacterized conserved protein, contains JmjC domain, at 12015 to 13653 10080 mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13985 to 15656 10081 mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15983 to 18222 10082

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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13,057 + 10080 mRNA_1712 0.64 -0.1
13,118 - 10080 mRNA_1712 0.67 -0.9
13,215 + 10080 mRNA_1712 0.73 0.2
13,277 + 10080 mRNA_1712 0.77 -2.2
13,521 + -0.9
13,805 - -1.2
13,961 - -1.4
13,969 + 1.4
13,990 - 0.1
14,076 - -1.3
14,109 - -0.8
14,130 - 1.7
14,146 + 1.0
14,250 + 10081 mRNA_1713 0.16 -0.4
14,354 - 10081 mRNA_1713 0.22 -0.8
14,391 + 10081 mRNA_1713 0.24 -2.0
14,404 + 10081 mRNA_1713 0.25 -3.9
14,417 + 10081 mRNA_1713 0.26 -1.1
14,429 + 10081 mRNA_1713 0.27 -1.7
14,465 - 10081 mRNA_1713 0.29 -0.4
14,506 - 10081 mRNA_1713 0.31 -1.2
14,607 - 10081 mRNA_1713 0.37 -1.4
14,615 - 10081 mRNA_1713 0.38 -3.3
14,617 + 10081 mRNA_1713 0.38 -1.5
14,639 + 10081 mRNA_1713 0.39 -2.9
14,689 - 10081 mRNA_1713 0.42 -1.2
14,710 + 10081 mRNA_1713 0.43 -1.2
14,742 - 10081 mRNA_1713 0.45 -1.6
14,781 - 10081 mRNA_1713 0.48 -0.2
14,823 - 10081 mRNA_1713 0.50 0.6
14,823 - 10081 mRNA_1713 0.50 -1.9
14,823 - 10081 mRNA_1713 0.50 -2.5
14,851 - 10081 mRNA_1713 0.52 1.5
15,035 - 10081 mRNA_1713 0.63 -3.6
15,147 + 10081 mRNA_1713 0.69 -1.6
15,168 - 10081 mRNA_1713 0.71 0.2
15,195 - 10081 mRNA_1713 0.72 -2.1
15,332 - 10081 mRNA_1713 0.81 -2.1
15,394 + 10081 mRNA_1713 0.84 0.5
15,422 - 10081 mRNA_1713 0.86 -1.7
15,438 + 10081 mRNA_1713 0.87 -1.3
15,528 + 0.8
15,531 - -2.8
15,579 + -2.4
15,588 - -0.6
15,708 - -0.9
15,756 - -0.1
15,831 - -1.6
15,850 - -3.7
15,852 - -3.6
15,853 - -0.9
15,856 - 0.5
15,858 + -4.1
15,860 - -2.7
15,861 + -0.5
15,879 + -1.9
15,887 - -1.3
15,889 - -1.5
15,897 + 1.9
15,897 + -0.9
16,049 + -2.0
16,192 - -1.6
16,253 - 10082 mRNA_1714 0.12 -2.3
16,353 + 10082 mRNA_1714 0.17 -1.3
16,433 - 10082 mRNA_1714 0.20 -1.4
16,475 - 10082 mRNA_1714 0.22 0.2
16,614 + 10082 mRNA_1714 0.28 -0.4