Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1712

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1711: 10079 - K01887 RARS, argS arginyl-tRNA synthetase, at 9070 to 11520 10079 mRNA_1712: 10080 - KOG2131 Uncharacterized conserved protein, contains JmjC domain, at 12015 to 13653 10080 mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13985 to 15656 10081

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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11,779 - -0.6
11,926 + -1.0
11,942 - -0.9
12,141 - 1.1
12,215 - 10080 mRNA_1712 0.12 -2.5
12,434 - 10080 mRNA_1712 0.26 -0.5
12,533 - 10080 mRNA_1712 0.32 -2.1
12,588 - 10080 mRNA_1712 0.35 -0.8
12,605 - 10080 mRNA_1712 0.36 -4.0
12,636 - 10080 mRNA_1712 0.38 -1.2
13,057 + 10080 mRNA_1712 0.64 -0.1
13,118 - 10080 mRNA_1712 0.67 -0.9
13,215 + 10080 mRNA_1712 0.73 0.2
13,277 + 10080 mRNA_1712 0.77 -2.2
13,521 + -0.9
13,805 - -1.2
13,961 - -1.4
13,969 + 1.4
13,990 - 0.1
14,076 - -1.3
14,109 - -0.8
14,130 - 1.7
14,146 + 1.0
14,250 + 10081 mRNA_1713 0.16 -0.4
14,354 - 10081 mRNA_1713 0.22 -0.8
14,391 + 10081 mRNA_1713 0.24 -2.0
14,404 + 10081 mRNA_1713 0.25 -3.9
14,417 + 10081 mRNA_1713 0.26 -1.1
14,429 + 10081 mRNA_1713 0.27 -1.7
14,465 - 10081 mRNA_1713 0.29 -0.4
14,506 - 10081 mRNA_1713 0.31 -1.2
14,607 - 10081 mRNA_1713 0.37 -1.4
14,615 - 10081 mRNA_1713 0.38 -3.3
14,617 + 10081 mRNA_1713 0.38 -1.5
14,639 + 10081 mRNA_1713 0.39 -2.9