Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1707

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1188 to 2835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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215 + -0.9
220 - -1.9
234 + -1.3
254 - -1.7
283 + -0.0
304 + -2.0
322 + 2.5
324 + -3.4
427 + -1.1
453 + 10074 mRNA_1706 0.13 -0.9
465 - 10074 mRNA_1706 0.14 1.1
482 + 10074 mRNA_1706 0.16 1.0
493 - 10074 mRNA_1706 0.18 0.9
647 + 10074 mRNA_1706 0.36 -2.6
683 - 10074 mRNA_1706 0.40 -2.6
809 + 10074 mRNA_1706 0.55 -1.4
842 - 10074 mRNA_1706 0.59 -1.1
844 + 10074 mRNA_1706 0.59 0.4
848 - 10074 mRNA_1706 0.59 1.0
902 + 10074 mRNA_1706 0.66 -1.2
949 - 10074 mRNA_1706 0.71 1.4
949 - 10074 mRNA_1706 0.71 0.5
950 + 10074 mRNA_1706 0.71 -1.3
974 - 10074 mRNA_1706 0.74 -0.7
1,016 + 10074 mRNA_1706 0.79 0.4
1,065 + 10074 mRNA_1706 0.85 -1.7
1,118 + -3.1
1,142 + -2.3
1,155 + -0.2
1,272 - -2.2
1,281 + -0.6
1,573 + 10075 mRNA_1707 0.23 0.7
1,625 + 10075 mRNA_1707 0.27 -1.1
1,625 + 10075 mRNA_1707 0.27 -0.3
1,628 + 10075 mRNA_1707 0.27 -0.6
1,646 + 10075 mRNA_1707 0.28 -2.8
1,649 - 10075 mRNA_1707 0.28 -1.2
1,680 + 10075 mRNA_1707 0.30 -1.4
1,781 + 10075 mRNA_1707 0.36 0.3
1,926 + 10075 mRNA_1707 0.45 -0.1
1,996 + 10075 mRNA_1707 0.49 -0.5
2,005 - 10075 mRNA_1707 0.50 -2.6
2,010 - 10075 mRNA_1707 0.50 0.0
2,033 + 10075 mRNA_1707 0.51 0.1
2,068 + 10075 mRNA_1707 0.53 0.1
2,076 + 10075 mRNA_1707 0.54 0.1
2,209 - 10075 mRNA_1707 0.62 -3.2
2,352 + 10075 mRNA_1707 0.71 -0.5
2,449 - 10075 mRNA_1707 0.77 -0.2
2,472 - 10075 mRNA_1707 0.78 -1.3
2,475 + 10075 mRNA_1707 0.78 -0.7
2,501 + 10075 mRNA_1707 0.80 -1.0
2,923 + -2.0
3,038 - -0.2
3,062 + 0.1
3,198 - 0.1
3,200 + -2.4
3,208 + -1.6
3,333 + -0.2
3,347 - -2.5
3,348 - -2.5
3,381 + 1.5
3,459 + -2.2
3,634 - -1.1
3,791 + -1.6