Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1689

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1688: 10056 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 895835 to 896742 10056 mRNA_1689: 10057 - KOG1286 Amino acid transporters, at 897050 to 899959 10057 mRNA_1690: 10058 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 900281 to 902715 10058

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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896,599 - 10056 mRNA_1688 0.84 -2.7
896,732 - -0.6
896,886 - -0.9
896,912 - 0.1
896,970 - -1.5
897,083 - -1.0
897,170 - -1.5
897,333 + -0.3
897,355 + 10057 mRNA_1689 0.10 -3.3
897,468 - 10057 mRNA_1689 0.14 -0.3
897,532 + 10057 mRNA_1689 0.17 0.0
897,723 - 10057 mRNA_1689 0.23 -1.4
897,769 + 10057 mRNA_1689 0.25 0.0
897,845 - 10057 mRNA_1689 0.27 1.1
897,870 + 10057 mRNA_1689 0.28 -0.1
897,920 + 10057 mRNA_1689 0.30 -1.7
897,929 - 10057 mRNA_1689 0.30 -1.9
897,935 + 10057 mRNA_1689 0.30 -0.4
897,949 - 10057 mRNA_1689 0.31 -1.8
897,968 - 10057 mRNA_1689 0.32 -3.2
897,977 + 10057 mRNA_1689 0.32 -3.0
897,998 + 10057 mRNA_1689 0.33 -2.1
898,047 - 10057 mRNA_1689 0.34 -0.2
898,059 - 10057 mRNA_1689 0.35 -0.9
898,120 + 10057 mRNA_1689 0.37 0.7
898,132 - 10057 mRNA_1689 0.37 -0.2
898,179 - 10057 mRNA_1689 0.39 -2.4
898,264 + 10057 mRNA_1689 0.42 -4.1
898,346 - 10057 mRNA_1689 0.45 -0.7
898,535 - 10057 mRNA_1689 0.51 -0.7
898,676 - 10057 mRNA_1689 0.56 0.5
898,683 + 10057 mRNA_1689 0.56 -1.6
898,962 - 10057 mRNA_1689 0.66 -2.9
898,971 - 10057 mRNA_1689 0.66 -2.2
898,984 - 10057 mRNA_1689 0.66 -0.8
899,401 - 10057 mRNA_1689 0.81 1.1
899,708 + -0.5
899,864 + -0.2
900,288 + -0.7
900,723 - 10058 mRNA_1690 0.18 -3.6