Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1680

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1679: 10047 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 873109 to 875707 10047 mRNA_1680: 10048 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 876384 to 878826 10048 mRNA_1681: 10049 - K03126 TAF12 transcription initiation factor TFIID subunit 12, at 879318 to 879933 10049

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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875,388 - 10047 mRNA_1679 0.88 -1.4
875,470 + -2.8
875,488 + -4.2
875,722 - -3.2
875,731 + -2.0
875,901 - -0.8
875,939 - -3.0
876,033 - 1.2
876,159 - -1.0
876,375 - -1.2
876,383 + 0.1
876,601 - 1.2
876,643 - 10048 mRNA_1680 0.11 -1.5
876,861 - 10048 mRNA_1680 0.20 0.8
877,048 - 10048 mRNA_1680 0.27 0.1
877,139 + 10048 mRNA_1680 0.31 -2.2
877,365 - 10048 mRNA_1680 0.40 -0.4
877,378 - 10048 mRNA_1680 0.41 -0.3
877,622 - 10048 mRNA_1680 0.51 -0.2
877,629 + 10048 mRNA_1680 0.51 -0.6
877,647 + 10048 mRNA_1680 0.52 -2.2
877,704 + 10048 mRNA_1680 0.54 -2.6
877,799 - 10048 mRNA_1680 0.58 -2.1
878,210 - 10048 mRNA_1680 0.75 -0.3
878,533 - 10048 mRNA_1680 0.88 -1.9
878,565 + 10048 mRNA_1680 0.89 0.3
878,565 + 10048 mRNA_1680 0.89 -1.1
878,588 - -2.2
878,742 + -0.8
878,857 - -1.9
879,009 + -1.6
879,132 + -0.4
879,135 + -1.3
879,274 + -0.8