Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1679

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1678: 10046 - K09498 CCT6 T-complex protein 1 subunit zeta, at 870469 to 873019 10046 mRNA_1679: 10047 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 873109 to 875707 10047 mRNA_1680: 10048 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 876384 to 878826 10048

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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873,291 - -3.1
873,475 + 10047 mRNA_1679 0.14 -2.5
873,665 + 10047 mRNA_1679 0.21 -0.6
874,004 + 10047 mRNA_1679 0.34 -3.3
874,021 - 10047 mRNA_1679 0.35 -0.5
874,040 - 10047 mRNA_1679 0.36 0.1
874,119 + 10047 mRNA_1679 0.39 -1.2
874,342 + 10047 mRNA_1679 0.47 -1.3
874,828 - 10047 mRNA_1679 0.66 -1.6
874,897 + 10047 mRNA_1679 0.69 -3.4
875,182 + 10047 mRNA_1679 0.80 0.7
875,198 - 10047 mRNA_1679 0.80 -2.7
875,277 + 10047 mRNA_1679 0.83 -0.4
875,388 - 10047 mRNA_1679 0.88 -1.4
875,470 + -2.8
875,488 + -4.2
875,722 - -3.2
875,731 + -2.0
875,901 - -0.8
875,939 - -3.0
876,033 - 1.2
876,159 - -1.0
876,375 - -1.2
876,383 + 0.1
876,601 - 1.2
876,643 - 10048 mRNA_1680 0.11 -1.5