Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1661

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1660: 10028 - Hypothetical Protein, at 833434 to 834294 10028 mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834385 to 835559 10029 mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836200 to 837347 10030

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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833,471 + -0.1
833,506 + -0.0
833,523 - 10028 mRNA_1660 0.10 -0.9
833,659 + 10028 mRNA_1660 0.26 -2.7
833,805 + 10028 mRNA_1660 0.43 -2.2
833,930 + 10028 mRNA_1660 0.58 -1.8
833,931 - 10028 mRNA_1660 0.58 -1.8
834,479 - -0.7
834,543 - 10029 mRNA_1661 0.13 0.5
834,553 + 10029 mRNA_1661 0.14 -1.2
834,634 + 10029 mRNA_1661 0.21 -0.9
834,974 - 10029 mRNA_1661 0.50 -2.1
835,255 + 10029 mRNA_1661 0.74 -0.8
835,422 - 10029 mRNA_1661 0.88 -0.1
835,733 - -1.8
835,801 + -1.0
835,823 - -1.4
835,843 + -0.7
835,857 - -0.8
835,971 + -1.1
835,996 - 0.8
836,183 + -3.0
836,275 + -0.9
836,337 + 10030 mRNA_1662 0.12 -2.3
836,484 + 10030 mRNA_1662 0.25 -0.5