Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1641

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783774 to 785106 10008 mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785580 to 788144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788752 to 789941 10010

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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784,734 + 10008 mRNA_1640 0.72 0.3
784,854 + 10008 mRNA_1640 0.81 0.7
784,903 + 10008 mRNA_1640 0.85 -1.8
785,028 + -0.4
785,170 - -1.8
785,232 + -0.9
785,462 + -0.2
785,505 + 1.5
786,056 + 10009 mRNA_1641 0.19 0.1
786,491 + 10009 mRNA_1641 0.36 -0.8
786,496 - 10009 mRNA_1641 0.36 -0.3
786,917 - 10009 mRNA_1641 0.52 -2.3
787,258 + 10009 mRNA_1641 0.65 -2.2
787,532 - 10009 mRNA_1641 0.76 -2.6
787,821 - 10009 mRNA_1641 0.87 -1.8
788,709 + -1.8
788,710 + -1.4
788,831 - -3.1
788,866 + -1.7
788,890 + 10010 mRNA_1642 0.12 -3.1
788,971 - 10010 mRNA_1642 0.18 -1.8
788,989 - 10010 mRNA_1642 0.20 -1.3
788,990 - 10010 mRNA_1642 0.20 -0.4
788,998 + 10010 mRNA_1642 0.21 1.3
789,136 + 10010 mRNA_1642 0.32 -4.2