Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1638

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773895 to 775574 10005 mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776391 to 779009 10006 mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779505 to 783057 10007

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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775,464 - -1.6
775,467 - -3.5
775,482 + -1.8
775,631 + -0.5
775,764 - 1.7
776,049 - 0.0
776,083 - -0.8
776,161 - -2.5
776,524 - -0.8
776,643 - -0.1
776,927 - 10006 mRNA_1638 0.20 -1.3
776,957 + 10006 mRNA_1638 0.22 -0.4
777,061 - 10006 mRNA_1638 0.26 -3.3
778,239 - 10006 mRNA_1638 0.71 -0.4
778,266 + 10006 mRNA_1638 0.72 -2.6
778,802 - -0.8
778,809 - -0.9
778,979 - 0.0
779,139 - -1.6
779,139 - -0.1
779,147 + -1.4
779,149 + -0.6
779,153 - 0.6
779,408 + -2.4
779,428 + -2.7